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The map label for this gene is oxaA [H]

Identifier: 226951097

GI number: 226951097

Start: 4153471

End: 4154124

Strand: Reverse

Name: oxaA [H]

Synonym: CLM_4150

Alternate gene names: 226951097

Gene position: 4154124-4153471 (Counterclockwise)

Preceding gene: 226951098

Following gene: 226951096

Centisome position: 99.97

GC content: 27.37

Gene sequence:

>654_bases
TTGCGATATTTAAATGATGCTTTTGTACAGTTTTTTAAATTTATACATGGAGCTGTATCAAATGTAATTAGTAATCCTAA
CTTTTCTTATGGTATAGCCATAATTTTAGTTACATTAATAATAAGACTATTAATACTTCCTTTAAACATAAAGCAAACAA
AATCTTCACTTAGAATGAATGAGTTACAACCAGAAATAAAGAAACTACAGGCAAAATATAAAAATGATCCTCAAAAATTA
AATCAAAAAACTATGGAACTTTATAAAGAAAAAGGGGTAAATCCTTTAGGAGGATGCTTACCTTTATTAATACAATGGCC
AATATTTATAGCATTATATTATGTATTTAATACTTTAACTGGCATAAATGGTATAAGTTTTTTATGGGTAAAAGATTTAG
CTAAACCAGATGTAGTTTTAGCGGTTCTTTCAGGTGCAACTACATATTTTTCCGGAACATTAATGACAACTGCAGATAGT
TCTCAGGCTGGACAGATGAAGTCAATGAATATAGGTATGTCTATCTTTATGATAGTAATAAGTTGGAAGTTAAAATCAGC
TTTAGTATTATACTGGGTTATAAATAATTTAATTCAAATAATACAAACAGTTATAATGAAAAAAATGGAGTTAAGAGGTA
AAGTTGAAGCCTAG

Upstream 100 bases:

>100_bases
GGCACCTTAATATCAATAAAGAGAATCTTAAAATGTCATCCTTTTAATGAAGGTGGCTACGACCCTGTAAAATAAATGCA
AAATCAGGAGGTTTAAAAAT

Downstream 100 bases:

>100_bases
GGGGTGTGACTTGGGGAATGAAAGTTATTGAAATGACTGGGAAGACCATAGAAGAAGCCATTAATCACGGATTAAAGGAA
TTAAATACTTCAAAAGATAA

Product: putative inner membrane protein translocase component YidC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MRYLNDAFVQFFKFIHGAVSNVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNELQPEIKKLQAKYKNDPQKL
NQKTMELYKEKGVNPLGGCLPLLIQWPIFIALYYVFNTLTGINGISFLWVKDLAKPDVVLAVLSGATTYFSGTLMTTADS
SQAGQMKSMNIGMSIFMIVISWKLKSALVLYWVINNLIQIIQTVIMKKMELRGKVEA

Sequences:

>Translated_217_residues
MRYLNDAFVQFFKFIHGAVSNVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNELQPEIKKLQAKYKNDPQKL
NQKTMELYKEKGVNPLGGCLPLLIQWPIFIALYYVFNTLTGINGISFLWVKDLAKPDVVLAVLSGATTYFSGTLMTTADS
SQAGQMKSMNIGMSIFMIVISWKLKSALVLYWVINNLIQIIQTVIMKKMELRGKVEA
>Mature_217_residues
MRYLNDAFVQFFKFIHGAVSNVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNELQPEIKKLQAKYKNDPQKL
NQKTMELYKEKGVNPLGGCLPLLIQWPIFIALYYVFNTLTGINGISFLWVKDLAKPDVVLAVLSGATTYFSGTLMTTADS
SQAGQMKSMNIGMSIFMIVISWKLKSALVLYWVINNLIQIIQTVIMKKMELRGKVEA

Specific function: Required for the insertion of integral membrane proteins into the membrane. Probably plays an essential role in the integration of proteins of the respiratory chain complexes. Involved in integration of membrane proteins that insert dependently and indepe

COG id: COG0706

COG function: function code U; Preprotein translocase subunit YidC

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OXA1/oxaA family. Type 3 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790140, Length=215, Percent_Identity=36.2790697674419, Blast_Score=128, Evalue=3e-31,
Organism=Drosophila melanogaster, GI24662345, Length=197, Percent_Identity=27.4111675126904, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21356443, Length=197, Percent_Identity=27.4111675126904, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001708 [H]

Pfam domain/function: PF02096 60KD_IMP [H]

EC number: NA

Molecular weight: Translated: 24527; Mature: 24527

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYLNDAFVQFFKFIHGAVSNVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMN
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ELQPEIKKLQAKYKNDPQKLNQKTMELYKEKGVNPLGGCLPLLIQWPIFIALYYVFNTLT
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GINGISFLWVKDLAKPDVVLAVLSGATTYFSGTLMTTADSSQAGQMKSMNIGMSIFMIVI
CCCCHHHHHHHHCCCCHHHHHHHHCCHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
SWKLKSALVLYWVINNLIQIIQTVIMKKMELRGKVEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRYLNDAFVQFFKFIHGAVSNVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMN
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ELQPEIKKLQAKYKNDPQKLNQKTMELYKEKGVNPLGGCLPLLIQWPIFIALYYVFNTLT
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GINGISFLWVKDLAKPDVVLAVLSGATTYFSGTLMTTADSSQAGQMKSMNIGMSIFMIVI
CCCCHHHHHHHHCCCCHHHHHHHHCCHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
SWKLKSALVLYWVINNLIQIIQTVIMKKMELRGKVEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12552129 [H]