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The map label for this gene is yjiM [H]

Identifier: 226951081

GI number: 226951081

Start: 4139478

End: 4140626

Strand: Reverse

Name: yjiM [H]

Synonym: CLM_4134

Alternate gene names: 226951081

Gene position: 4140626-4139478 (Counterclockwise)

Preceding gene: 226951082

Following gene: 226951080

Centisome position: 99.65

GC content: 29.33

Gene sequence:

>1149_bases
ATGAATAATTTGCCAGAAAAGTTTGACGAGTTTAATGAAGCGAGAAGAAATGGTTTTATAACTATTAAAAAATTAAAGGA
TGAAGGTAAAAAAGTTGTAGGCGTATTTTGTACATATACTCCATGGGAAATAATATCTGCATCAGGGGCAACTGTAGTAG
CTTTATGTGGTAAAAATGATGAAGCTATACCAGATGCAGAAAAAGTATTACCAAGAAATTTATGTCCACTTATAAAAGCA
TCTTATGGATTTGCTATAACTGAAAAATGTCCCTATACTTATTTTTCAGATTTAATAGTGGGAGAAACTACTTGTGATGG
AAAGAAAAAAATGTATGAATATTTAAATGATATAAGACCAGTTCATGTTATGCAATTGCCTCAAATAAGCACAGGAGAAG
ATGCTTATAATCTATGGAGAAATGAAATAGTAAAACTAAAAGAAAGACTAGAAAAAGATTTTAATGTAGAAATAACTGAA
GAGAACATAAGAGAAATGATAAAACTTAGAAATAAAGAAAGACAAGCTCTTAGAGAATTTTATGAATTAGGAAGAATGTG
TCCACCACCGGTAACAGGACTTGAAATAATGAAGGTTTTAAATGGAGCTAGCTTTAAATGGGATAAAGAAGAAGAAATAA
AATCTTTAAAAGATATGATAGATAATGCAAAAGATAAATATGAAAAGGGCGAAAGAAAAGTATCTAAAGATGCAAAAAGA
ATACTTATAACAGGATGCCCTATGGGAGAGGGAACGGAAAAGATAATAAGATTAATTGAAGAAAATGATGGAAATGTTGT
AGTATTTGAAAACTGTAGTGGTGTTAAAGAAATAGAGAAATTAGTAGATGAAGAAAAAGATCCTATAGATGCAATAGCAG
AAAAATATTTAGCTATAGGTTGTTCATGTATGAGCCCTAATACTAATAGATTGAATTTATTATCAGAATTAATAGATGAT
TATAAGGTTGATGGAGTTGTGGATGTAATATTACAGGCCTGTCATACCTACAATGTGGAAACCCAATCGGTAAAAGAGTT
TGTAAATAATGAAAAAAATGTACCATATATGAGTATAGAAACAGATTATTCTCAAACTGATATAGGACAATTAAAAACAA
GAATAGCAGCATTTATAGAAATGTTATAA

Upstream 100 bases:

>100_bases
GTATAAGTTAATTAGTAGGCGAATTTTATGCTTATACTAAATTTGAAAATTGAGAATTACAAAAATTTTTAATACTTATA
AATTAATAAGGGGGATTTTA

Downstream 100 bases:

>100_bases
AAAACATTGATTTATAATAGTTTATATGATAAAATTATTTGATGTACGATAAGATCCCTGCTGTACAAAGTACAGCCGTT
AGTCCGTGGGGAGGAGGTGA

Product: 2-hydroxyglutaryl-CoA dehydratase subunit D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MNNLPEKFDEFNEARRNGFITIKKLKDEGKKVVGVFCTYTPWEIISASGATVVALCGKNDEAIPDAEKVLPRNLCPLIKA
SYGFAITEKCPYTYFSDLIVGETTCDGKKKMYEYLNDIRPVHVMQLPQISTGEDAYNLWRNEIVKLKERLEKDFNVEITE
ENIREMIKLRNKERQALREFYELGRMCPPPVTGLEIMKVLNGASFKWDKEEEIKSLKDMIDNAKDKYEKGERKVSKDAKR
ILITGCPMGEGTEKIIRLIEENDGNVVVFENCSGVKEIEKLVDEEKDPIDAIAEKYLAIGCSCMSPNTNRLNLLSELIDD
YKVDGVVDVILQACHTYNVETQSVKEFVNNEKNVPYMSIETDYSQTDIGQLKTRIAAFIEML

Sequences:

>Translated_382_residues
MNNLPEKFDEFNEARRNGFITIKKLKDEGKKVVGVFCTYTPWEIISASGATVVALCGKNDEAIPDAEKVLPRNLCPLIKA
SYGFAITEKCPYTYFSDLIVGETTCDGKKKMYEYLNDIRPVHVMQLPQISTGEDAYNLWRNEIVKLKERLEKDFNVEITE
ENIREMIKLRNKERQALREFYELGRMCPPPVTGLEIMKVLNGASFKWDKEEEIKSLKDMIDNAKDKYEKGERKVSKDAKR
ILITGCPMGEGTEKIIRLIEENDGNVVVFENCSGVKEIEKLVDEEKDPIDAIAEKYLAIGCSCMSPNTNRLNLLSELIDD
YKVDGVVDVILQACHTYNVETQSVKEFVNNEKNVPYMSIETDYSQTDIGQLKTRIAAFIEML
>Mature_382_residues
MNNLPEKFDEFNEARRNGFITIKKLKDEGKKVVGVFCTYTPWEIISASGATVVALCGKNDEAIPDAEKVLPRNLCPLIKA
SYGFAITEKCPYTYFSDLIVGETTCDGKKKMYEYLNDIRPVHVMQLPQISTGEDAYNLWRNEIVKLKERLEKDFNVEITE
ENIREMIKLRNKERQALREFYELGRMCPPPVTGLEIMKVLNGASFKWDKEEEIKSLKDMIDNAKDKYEKGERKVSKDAKR
ILITGCPMGEGTEKIIRLIEENDGNVVVFENCSGVKEIEKLVDEEKDPIDAIAEKYLAIGCSCMSPNTNRLNLLSELIDD
YKVDGVVDVILQACHTYNVETQSVKEFVNNEKNVPYMSIETDYSQTDIGQLKTRIAAFIEML

Specific function: Unknown

COG id: COG1775

COG function: function code E; Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0007 [H]

Homologues:

Organism=Escherichia coli, GI87082427, Length=382, Percent_Identity=54.7120418848168, Blast_Score=457, Evalue=1e-130,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010327 [H]

Pfam domain/function: PF06050 HGD-D [H]

EC number: NA

Molecular weight: Translated: 43611; Mature: 43611

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNLPEKFDEFNEARRNGFITIKKLKDEGKKVVGVFCTYTPWEIISASGATVVALCGKND
CCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCHHHHCCCCCEEEEEECCCC
EAIPDAEKVLPRNLCPLIKASYGFAITEKCPYTYFSDLIVGETTCDGKKKMYEYLNDIRP
CCCCCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
VHVMQLPQISTGEDAYNLWRNEIVKLKERLEKDFNVEITEENIREMIKLRNKERQALREF
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHH
YELGRMCPPPVTGLEIMKVLNGASFKWDKEEEIKSLKDMIDNAKDKYEKGERKVSKDAKR
HHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCE
ILITGCPMGEGTEKIIRLIEENDGNVVVFENCSGVKEIEKLVDEEKDPIDAIAEKYLAIG
EEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHC
CSCMSPNTNRLNLLSELIDDYKVDGVVDVILQACHTYNVETQSVKEFVNNEKNVPYMSIE
CEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEE
TDYSQTDIGQLKTRIAAFIEML
CCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNNLPEKFDEFNEARRNGFITIKKLKDEGKKVVGVFCTYTPWEIISASGATVVALCGKND
CCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCHHHHCCCCCEEEEEECCCC
EAIPDAEKVLPRNLCPLIKASYGFAITEKCPYTYFSDLIVGETTCDGKKKMYEYLNDIRP
CCCCCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
VHVMQLPQISTGEDAYNLWRNEIVKLKERLEKDFNVEITEENIREMIKLRNKERQALREF
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHH
YELGRMCPPPVTGLEIMKVLNGASFKWDKEEEIKSLKDMIDNAKDKYEKGERKVSKDAKR
HHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCE
ILITGCPMGEGTEKIIRLIEENDGNVVVFENCSGVKEIEKLVDEEKDPIDAIAEKYLAIG
EEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHC
CSCMSPNTNRLNLLSELIDDYKVDGVVDVILQACHTYNVETQSVKEFVNNEKNVPYMSIE
CEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEE
TDYSQTDIGQLKTRIAAFIEML
CCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]