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The map label for this gene is 226950989

Identifier: 226950989

GI number: 226950989

Start: 4044615

End: 4044854

Strand: Reverse

Name: 226950989

Synonym: CLM_4025

Alternate gene names: NA

Gene position: 4044854-4044615 (Counterclockwise)

Preceding gene: 226950990

Following gene: 226950988

Centisome position: 97.34

GC content: 27.5

Gene sequence:

>240_bases
TTGCGTTTAGATAAATTTCTTAAAGTTTCAAGAATAATAAAAAGAAGAACTGTGGCTAAAGAGGCTTGTGAAAATGAAAG
AGTTCTTGTTAATTCTAAAACAGCTAAACCAGGTACTGAAGTTAAAGAGGGAGATCTCTTAGAAATACAATATGCTAATA
AAACTATGAAGTATGAAATAATGTCTGTTTTAGAGCATGTAAAAAAAGAAGATGCTGAAAATATGTACAAAATTATATAA

Upstream 100 bases:

>100_bases
CTAAAAGAAAAAGTAAACAAAAAATAAATAATAAATATAAAAAACCTAGGTTTTAATCTGGGTTTTTTGTTTATTTATAT
AAAATTAAGGGGGAAAGGAT

Downstream 100 bases:

>100_bases
TTTTTAAAATAAAAGGTTCTAAAAAGTTTTTAAAATACTATTTTTTAGAACCTTTTATTTTATAGTAATATACAATAATG
AATAAGCATATATTATTTAT

Product: S4 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 79

Protein sequence:

>79_residues
MRLDKFLKVSRIIKRRTVAKEACENERVLVNSKTAKPGTEVKEGDLLEIQYANKTMKYEIMSVLEHVKKEDAENMYKII

Sequences:

>Translated_79_residues
MRLDKFLKVSRIIKRRTVAKEACENERVLVNSKTAKPGTEVKEGDLLEIQYANKTMKYEIMSVLEHVKKEDAENMYKII
>Mature_79_residues
MRLDKFLKVSRIIKRRTVAKEACENERVLVNSKTAKPGTEVKEGDLLEIQYANKTMKYEIMSVLEHVKKEDAENMYKII

Specific function: Unknown

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 9244; Mature: 9244

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLDKFLKVSRIIKRRTVAKEACENERVLVNSKTAKPGTEVKEGDLLEIQYANKTMKYEI
CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCHHHHHH
MSVLEHVKKEDAENMYKII
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRLDKFLKVSRIIKRRTVAKEACENERVLVNSKTAKPGTEVKEGDLLEIQYANKTMKYEI
CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCHHHHHH
MSVLEHVKKEDAENMYKII
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]