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The map label for this gene is 226950939

Identifier: 226950939

GI number: 226950939

Start: 3980341

End: 3980583

Strand: Reverse

Name: 226950939

Synonym: CLM_3954

Alternate gene names: NA

Gene position: 3980583-3980341 (Counterclockwise)

Preceding gene: 226950940

Following gene: 226950938

Centisome position: 95.8

GC content: 32.51

Gene sequence:

>243_bases
ATGATGATTGACAGACTTAAAGGCAATAAAGTTGTAGGGGTTAAGCAAACAGTTAAGGCTTTGAAAAACAATACTGTTAA
AGCTTTGTATGTATCTAAGGATGCGGATGAAAGTTTAATAAAACCACTTATAGAATTAGCTGAAGAGAATTCCATAGATA
TAATAAAGGTTGATACAATGAAAGAATTAGGACGACTTTGTGGTATTGATGTAAGTGCTGCTACAGCAGCATTACTGAAA
TAA

Upstream 100 bases:

>100_bases
TGTACTTTCAAAATGATAAAATACACCTGTTATATGTTTTAATATAGGAAGCAAAGTTATTACTTTGTTTCCTTATTAAT
GGAATTTAGGGAGGAAGTCA

Downstream 100 bases:

>100_bases
ACATTAGCTAATAAGTAGCCAATTTGGCATATTTATAGAATAATTTATTTATCTAATTATGAAGGAGGTGCACGTATGCC
AACAATTAGCCAATTAGTAA

Product: ribosomal protein L7Ae family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 80

Protein sequence:

>80_residues
MMIDRLKGNKVVGVKQTVKALKNNTVKALYVSKDADESLIKPLIELAEENSIDIIKVDTMKELGRLCGIDVSAATAALLK

Sequences:

>Translated_80_residues
MMIDRLKGNKVVGVKQTVKALKNNTVKALYVSKDADESLIKPLIELAEENSIDIIKVDTMKELGRLCGIDVSAATAALLK
>Mature_80_residues
MMIDRLKGNKVVGVKQTVKALKNNTVKALYVSKDADESLIKPLIELAEENSIDIIKVDTMKELGRLCGIDVSAATAALLK

Specific function: Unknown

COG id: COG1358

COG function: function code J; Ribosomal protein HS6-type (S12/L30/L7a)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L7Ae family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004038
- InterPro:   IPR000948 [H]

Pfam domain/function: PF01248 Ribosomal_L7Ae [H]

EC number: NA

Molecular weight: Translated: 8684; Mature: 8684

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIDRLKGNKVVGVKQTVKALKNNTVKALYVSKDADESLIKPLIELAEENSIDIIKVDTM
CCCCCCCCCEEECHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCH
KELGRLCGIDVSAATAALLK
HHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure
MMIDRLKGNKVVGVKQTVKALKNNTVKALYVSKDADESLIKPLIELAEENSIDIIKVDTM
CCCCCCCCCEEECHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCH
KELGRLCGIDVSAATAALLK
HHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]