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The map label for this gene is 226950892

Identifier: 226950892

GI number: 226950892

Start: 3950322

End: 3951029

Strand: Reverse

Name: 226950892

Synonym: CLM_3907

Alternate gene names: NA

Gene position: 3951029-3950322 (Counterclockwise)

Preceding gene: 226950893

Following gene: 226950890

Centisome position: 95.08

GC content: 24.01

Gene sequence:

>708_bases
ATGAGAAAGGATAATAAATTTAGAAAGGGTTTTTGGAGTAAATTCTCAGTAAAGACTAAATTAAGTATATTTATAGTACT
ATCTATAGTAGCTATATCTAGTGTTTATTATAATAATTTAAAACAATCTCAAAATAATAATATAAATAAAAACACAGAGA
ATAATACTTCTATAAAATTAGAAAATAAAGATAAAAAAAAGAATAAAGATAGTAAATTTAATAAAGAACTAGAGGAAAAG
TGTGAAAAAGGTAAAAAGCTATTTTTTGATAAAAAATATGATGAAGCTATAAAAATTCAAGATGAAGTTATAAAAGAAGA
CAGTAATTTTTATAAAGCATATAACATAAAAGGAATAGCATTATGTTATAGTGGAAGTTTTGAAGAAGGTATGAAAAATA
TAGATAAATCATTAGATATAAAGCCTGATTATGGATATGCTAGATTTAATAAAGCTTTAGCTTATGAATTATATGAAAGG
TTCGATGAGGCTTTAAAATGGTATGATAAAGCTTTAGATATAGAAAAATATGAATGGAGTTATTATGGTAAAGCAAGCAT
TTATGGAAGAAGAGGGGACGTAAAAAATACAGTTGAATATTTGAAAAAAGCTATAGAGATTTCTCCGGGAGTAAAGGAAG
AAGCTAAAAATGAAGAAGATTTTGAACCAGTAAAAAATTCCGAGGAATTTAAAGCTTTAATAAAATAG

Upstream 100 bases:

>100_bases
TGGATTGGAAGATTATTTGAAAAGTTTATAATAATGTAGAAATTTAAACGCTAATAATATTAAATATTTACTTTTTAAAT
GTAGGATAGAGGGGTATATA

Downstream 100 bases:

>100_bases
TCTGAATTTTTAATAGCTACAGCAAATATTATTTAAAATTTTATTAATATAAAGATATAGTTGAATTTAAGGATAAATAA
AAAGATTTAAAATTTAATTT

Product: tetratricopeptide repeat-containing protein

Products: NA

Alternate protein names: TPR-Repeat-Containing Protein; Tetratricopeptide Repeat Protein; Tetratricopeptide Repeat Domain Protein; Tetratricopeptide Protein; Tetratricopeptide Repeat Family; TPR Domain Protein; Tetratricopeptide TPR_1 Repeat-Containing Protein; Fog Tpr Repeat; Tetratricopeptide TPR_2 Repeat Protein; Tetratricopeptide Repeat Containing Protein

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MRKDNKFRKGFWSKFSVKTKLSIFIVLSIVAISSVYYNNLKQSQNNNINKNTENNTSIKLENKDKKKNKDSKFNKELEEK
CEKGKKLFFDKKYDEAIKIQDEVIKEDSNFYKAYNIKGIALCYSGSFEEGMKNIDKSLDIKPDYGYARFNKALAYELYER
FDEALKWYDKALDIEKYEWSYYGKASIYGRRGDVKNTVEYLKKAIEISPGVKEEAKNEEDFEPVKNSEEFKALIK

Sequences:

>Translated_235_residues
MRKDNKFRKGFWSKFSVKTKLSIFIVLSIVAISSVYYNNLKQSQNNNINKNTENNTSIKLENKDKKKNKDSKFNKELEEK
CEKGKKLFFDKKYDEAIKIQDEVIKEDSNFYKAYNIKGIALCYSGSFEEGMKNIDKSLDIKPDYGYARFNKALAYELYER
FDEALKWYDKALDIEKYEWSYYGKASIYGRRGDVKNTVEYLKKAIEISPGVKEEAKNEEDFEPVKNSEEFKALIK
>Mature_235_residues
MRKDNKFRKGFWSKFSVKTKLSIFIVLSIVAISSVYYNNLKQSQNNNINKNTENNTSIKLENKDKKKNKDSKFNKELEEK
CEKGKKLFFDKKYDEAIKIQDEVIKEDSNFYKAYNIKGIALCYSGSFEEGMKNIDKSLDIKPDYGYARFNKALAYELYER
FDEALKWYDKALDIEKYEWSYYGKASIYGRRGDVKNTVEYLKKAIEISPGVKEEAKNEEDFEPVKNSEEFKALIK

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27695; Mature: 27695

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKDNKFRKGFWSKFSVKTKLSIFIVLSIVAISSVYYNNLKQSQNNNINKNTENNTSIKL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
ENKDKKKNKDSKFNKELEEKCEKGKKLFFDKKYDEAIKIQDEVIKEDSNFYKAYNIKGIA
CCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHCCCCEEEEECCCEEE
LCYSGSFEEGMKNIDKSLDIKPDYGYARFNKALAYELYERFDEALKWYDKALDIEKYEWS
EEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
YYGKASIYGRRGDVKNTVEYLKKAIEISPGVKEEAKNEEDFEPVKNSEEFKALIK
ECCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCHHHHHHCC
>Mature Secondary Structure
MRKDNKFRKGFWSKFSVKTKLSIFIVLSIVAISSVYYNNLKQSQNNNINKNTENNTSIKL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
ENKDKKKNKDSKFNKELEEKCEKGKKLFFDKKYDEAIKIQDEVIKEDSNFYKAYNIKGIA
CCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHCCCCEEEEECCCEEE
LCYSGSFEEGMKNIDKSLDIKPDYGYARFNKALAYELYERFDEALKWYDKALDIEKYEWS
EEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
YYGKASIYGRRGDVKNTVEYLKKAIEISPGVKEEAKNEEDFEPVKNSEEFKALIK
ECCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA