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The map label for this gene is yfkH [H]

Identifier: 226950854

GI number: 226950854

Start: 3910873

End: 3911730

Strand: Reverse

Name: yfkH [H]

Synonym: CLM_3867

Alternate gene names: 226950854

Gene position: 3911730-3910873 (Counterclockwise)

Preceding gene: 226950855

Following gene: 226950853

Centisome position: 94.14

GC content: 27.74

Gene sequence:

>858_bases
TTGAATAAAAATCTTTTTAAAATCATACCTAAGAGTATAAAAAAACTAGCAAATAGGTTTCTAGAGGATGAAGTATTAGC
ATTATCCTCACAGTTGGCCTATGCTTTGATTATATCAGTATTTCCTTTCCTAATGTTTGTAATAACATTAATAGGATATT
TACCTATACATAGTGAAGATCTATTATTGGGATTAAAGGAGATAATGCCAAGCAATACTTATTTATTATTGAAAAATACT
ATAGAAGAAATTATTTATACTCAAAATGGAAATTTACTTTCCTTCAGTATAATATTTACTATTTGGACTGCTTCAGCTGG
TTTCAGAGCTGTAGTAAGAGGGTTGAATAGAGCTTACGATGTAAAAGAGAGAAGATCCTTTGTAAAAGTTCAAATCATGA
CCATTTTTTGTACATTAGGTATGGCATTTGTACTTGTTATGAGTATTTTTTTGTTGGTATTTGGAAAAACAATAGGCAGA
ACCTTAGTTTATAAACTAGGTTTTTCATTGGAGTTTAATAGGATATGGAATTTAATAAGATATATAATAATGATAGGGGT
AACTATATTTATTTTAGCTGCATTATATTACTATACTCCTAGCAAAAGATTAAGATGGAGGGATGTATTACCTGGAGCTA
TATTTGCTACAATAGCTTGGATAATTGCCTCTATGGGTTTTTCTTTTTATGTAGATAATTTTAATAATTACTCTAGATTG
TATGGTAGTATAGGAGCGGTTATTGTTTTTTTAGTGTGGTTATATTTAACATCCATAATAGTTATTACAGGAGGAGAAAT
AAATGCATTATTAGTGTCAAGTAGAGAAAAGGATTTAAAAAATAAAAATTATTTATAA

Upstream 100 bases:

>100_bases
TCATCTATTTTGAAATAAATCTTTAATTTTTAAATATACTAACTAATATTACTTTATATAGTATATAATTGTATTAAAAA
TACTAAAAGGAGTTAGTGCT

Downstream 100 bases:

>100_bases
AAATGTATTGATTAAACAAATTTTTTAATATATAATTATTATTAAATTAAATATGGATTCTTATCCAGAGCGGCGGAGGG
ACTGGCCCTATGAAGCCCGG

Product: YihY family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MNKNLFKIIPKSIKKLANRFLEDEVLALSSQLAYALIISVFPFLMFVITLIGYLPIHSEDLLLGLKEIMPSNTYLLLKNT
IEEIIYTQNGNLLSFSIIFTIWTASAGFRAVVRGLNRAYDVKERRSFVKVQIMTIFCTLGMAFVLVMSIFLLVFGKTIGR
TLVYKLGFSLEFNRIWNLIRYIIMIGVTIFILAALYYYTPSKRLRWRDVLPGAIFATIAWIIASMGFSFYVDNFNNYSRL
YGSIGAVIVFLVWLYLTSIIVITGGEINALLVSSREKDLKNKNYL

Sequences:

>Translated_285_residues
MNKNLFKIIPKSIKKLANRFLEDEVLALSSQLAYALIISVFPFLMFVITLIGYLPIHSEDLLLGLKEIMPSNTYLLLKNT
IEEIIYTQNGNLLSFSIIFTIWTASAGFRAVVRGLNRAYDVKERRSFVKVQIMTIFCTLGMAFVLVMSIFLLVFGKTIGR
TLVYKLGFSLEFNRIWNLIRYIIMIGVTIFILAALYYYTPSKRLRWRDVLPGAIFATIAWIIASMGFSFYVDNFNNYSRL
YGSIGAVIVFLVWLYLTSIIVITGGEINALLVSSREKDLKNKNYL
>Mature_285_residues
MNKNLFKIIPKSIKKLANRFLEDEVLALSSQLAYALIISVFPFLMFVITLIGYLPIHSEDLLLGLKEIMPSNTYLLLKNT
IEEIIYTQNGNLLSFSIIFTIWTASAGFRAVVRGLNRAYDVKERRSFVKVQIMTIFCTLGMAFVLVMSIFLLVFGKTIGR
TLVYKLGFSLEFNRIWNLIRYIIMIGVTIFILAALYYYTPSKRLRWRDVLPGAIFATIAWIIASMGFSFYVDNFNNYSRL
YGSIGAVIVFLVWLYLTSIIVITGGEINALLVSSREKDLKNKNYL

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 32624; Mature: 32624

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKNLFKIIPKSIKKLANRFLEDEVLALSSQLAYALIISVFPFLMFVITLIGYLPIHSED
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
LLLGLKEIMPSNTYLLLKNTIEEIIYTQNGNLLSFSIIFTIWTASAGFRAVVRGLNRAYD
HHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHC
VKERRSFVKVQIMTIFCTLGMAFVLVMSIFLLVFGKTIGRTLVYKLGFSLEFNRIWNLIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHH
YIIMIGVTIFILAALYYYTPSKRLRWRDVLPGAIFATIAWIIASMGFSFYVDNFNNYSRL
HHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHCCHHEEECCCCHHHHH
YGSIGAVIVFLVWLYLTSIIVITGGEINALLVSSREKDLKNKNYL
HHHHHHHHHHHHHHHHHHHHHEECCCEEEEEECCHHHHCCCCCCC
>Mature Secondary Structure
MNKNLFKIIPKSIKKLANRFLEDEVLALSSQLAYALIISVFPFLMFVITLIGYLPIHSED
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
LLLGLKEIMPSNTYLLLKNTIEEIIYTQNGNLLSFSIIFTIWTASAGFRAVVRGLNRAYD
HHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHC
VKERRSFVKVQIMTIFCTLGMAFVLVMSIFLLVFGKTIGRTLVYKLGFSLEFNRIWNLIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHH
YIIMIGVTIFILAALYYYTPSKRLRWRDVLPGAIFATIAWIIASMGFSFYVDNFNNYSRL
HHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHCCHHEEECCCCHHHHH
YGSIGAVIVFLVWLYLTSIIVITGGEINALLVSSREKDLKNKNYL
HHHHHHHHHHHHHHHHHHHHHEECCCEEEEEECCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]