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The map label for this gene is ycdX [C]

Identifier: 226950829

GI number: 226950829

Start: 3883341

End: 3884072

Strand: Reverse

Name: ycdX [C]

Synonym: CLM_3841

Alternate gene names: 226950829

Gene position: 3884072-3883341 (Counterclockwise)

Preceding gene: 226950830

Following gene: 226950828

Centisome position: 93.47

GC content: 30.19

Gene sequence:

>732_bases
GTGAGATATTTAGTAGATACACATACACATACAATAGTAAGTGGGCATGCATACACTACATTTTTAGAAAATGTACAAGA
AGCTTCTAATATAGGTCTAAAAGTTTTAGGTACTACGGATCACGGGCCAAGTATGCCAGGAGGACCTAATCTATTTTATT
TTAATAATTTTAAGGTTATGCCTAGAAAATTAAAAGGAGTAACTTTATTACATGGTTGCGAAGCTAATATTATAGATTTT
AAGGGGATGCTAGATATTCCTGATTTTACTCAAAAAAAATTAGATGTAATTATAGCTAGTTTACATGATGTTTGCATAAG
ACCTGGTAGTGTGGAAGAAAATACAGAGGCATTAATTAATGTTATGGAGAATCCCTATGTAGATATACTGGGACATATTG
GGAACCCTTCTTTTCCAATAAATGAAGAAGTAGTAGTAAAGAAGGCTAAAGAAAAAAATGTATTAATAGAAATAAATAAT
GGTTCTTTTGTTTCAAGAAAGGGCAGTGAAGAAACCTGCAAAAAGGTAGCAAATTTATGCAAAAAGCATAAAGTAAATAT
TATAGTAGGCAGTGATTCGCATGTTTGTTTTCAAATAGGTAGATTCCCTAAAGCAGACAATATGCTTAAAGGGATAGGTA
TGCCAGAGGAACTTATTATAAATAATGAAGAGAATAAAATATTAGAATATTTAAAGAATAAAGGAAAGTTAAAGGATTTA
AATCTTGATTAA

Upstream 100 bases:

>100_bases
ACCATCTATGGATAAGAAGTCAGCTGAGTGTGTGCTTGAATTTTTTAAATAAAAATTGTTTTTTACTAGAAAGTATAAAA
TTATTGAGAGAAGGGTTAAA

Downstream 100 bases:

>100_bases
GGGCTAAGCATACATTATACTAATAAGGGTATTTAATTTAGTAATAAAAAAATCAAGGAGAATGTGTTATGAACCAATAT
AAAAATTTTATCATGCAGTT

Product: putative hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MRYLVDTHTHTIVSGHAYTTFLENVQEASNIGLKVLGTTDHGPSMPGGPNLFYFNNFKVMPRKLKGVTLLHGCEANIIDF
KGMLDIPDFTQKKLDVIIASLHDVCIRPGSVEENTEALINVMENPYVDILGHIGNPSFPINEEVVVKKAKEKNVLIEINN
GSFVSRKGSEETCKKVANLCKKHKVNIIVGSDSHVCFQIGRFPKADNMLKGIGMPEELIINNEENKILEYLKNKGKLKDL
NLD

Sequences:

>Translated_243_residues
MRYLVDTHTHTIVSGHAYTTFLENVQEASNIGLKVLGTTDHGPSMPGGPNLFYFNNFKVMPRKLKGVTLLHGCEANIIDF
KGMLDIPDFTQKKLDVIIASLHDVCIRPGSVEENTEALINVMENPYVDILGHIGNPSFPINEEVVVKKAKEKNVLIEINN
GSFVSRKGSEETCKKVANLCKKHKVNIIVGSDSHVCFQIGRFPKADNMLKGIGMPEELIINNEENKILEYLKNKGKLKDL
NLD
>Mature_243_residues
MRYLVDTHTHTIVSGHAYTTFLENVQEASNIGLKVLGTTDHGPSMPGGPNLFYFNNFKVMPRKLKGVTLLHGCEANIIDF
KGMLDIPDFTQKKLDVIIASLHDVCIRPGSVEENTEALINVMENPYVDILGHIGNPSFPINEEVVVKKAKEKNVLIEINN
GSFVSRKGSEETCKKVANLCKKHKVNIIVGSDSHVCFQIGRFPKADNMLKGIGMPEELIINNEENKILEYLKNKGKLKDL
NLD

Specific function: Unknown

COG id: COG1387

COG function: function code ER; Histidinol phosphatase and related hydrolases of the PHP family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PHP family [H]

Homologues:

Organism=Escherichia coli, GI1787271, Length=234, Percent_Identity=37.1794871794872, Blast_Score=168, Evalue=4e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: NA

Molecular weight: Translated: 27071; Mature: 27071

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYLVDTHTHTIVSGHAYTTFLENVQEASNIGLKVLGTTDHGPSMPGGPNLFYFNNFKVM
CCEEEECCCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEECCEEEC
PRKLKGVTLLHGCEANIIDFKGMLDIPDFTQKKLDVIIASLHDVCIRPGSVEENTEALIN
CHHCCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
VMENPYVDILGHIGNPSFPINEEVVVKKAKEKNVLIEINNGSFVSRKGSEETCKKVANLC
HHCCCCEEEEECCCCCCCCCCHHHHEEECCCCCEEEEECCCCEEECCCCHHHHHHHHHHH
KKHKVNIIVGSDSHVCFQIGRFPKADNMLKGIGMPEELIINNEENKILEYLKNKGKLKDL
HHCEEEEEEECCCCEEEEECCCCCCCCHHHHCCCCHHHEEECCHHHHHHHHHCCCCEECC
NLD
CCC
>Mature Secondary Structure
MRYLVDTHTHTIVSGHAYTTFLENVQEASNIGLKVLGTTDHGPSMPGGPNLFYFNNFKVM
CCEEEECCCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEECCEEEC
PRKLKGVTLLHGCEANIIDFKGMLDIPDFTQKKLDVIIASLHDVCIRPGSVEENTEALIN
CHHCCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
VMENPYVDILGHIGNPSFPINEEVVVKKAKEKNVLIEINNGSFVSRKGSEETCKKVANLC
HHCCCCEEEEECCCCCCCCCCHHHHEEECCCCCEEEEECCCCEEECCCCHHHHHHHHHHH
KKHKVNIIVGSDSHVCFQIGRFPKADNMLKGIGMPEELIINNEENKILEYLKNKGKLKDL
HHCEEEEEEECCCCEEEEECCCCCCCCHHHHCCCCHHHEEECCHHHHHHHHHCCCCEECC
NLD
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA