Click here to switch to the map view.

The map label for this gene is rpoE [C]

Identifier: 226950783

GI number: 226950783

Start: 3833035

End: 3833607

Strand: Reverse

Name: rpoE [C]

Synonym: CLM_3794

Alternate gene names: 226950783

Gene position: 3833607-3833035 (Counterclockwise)

Preceding gene: 226950784

Following gene: 226950782

Centisome position: 92.26

GC content: 28.45

Gene sequence:

>573_bases
TTGGGACTAAGTGATGAAGAATTGGTTAATGAAATTATTAGTGGAAACCGGTCTGCTATGGAAGTACTTGTAAATAGAAA
TTATAAATTGGTATATGCTTTTATATATAGAAATATAGGAGAGTATCATACTACACTGGATTTGACTCAGGAGAGTTTTA
TAAAAATTATGAAAAGCTTGAAAATGTTTAAAAGTCATAAGGGCAATTTCCAATGCTGGATCTTAAAAATAGCTTTAAAT
GTTTGTAAAGATTATTGGAAAAGTGCTTATATTAAACATAATACTGTTGATGATAGTTCTTTAGAGAAAGTTTATGAAAA
GGGAAATATTATAAATTATTTAGAAAAGATTGAAGAAAGACAGGAAATTAAAAAAGCTATGATGGCACTGTCAGAGGAAC
AAAGAGAAGTAATCATATTGAGATATTACAACGATTTAAAAATAAGGGATATAGCTAATATAACAGAAATAAAAGAGTCC
ACTGTAAAGTCAAGATTAAGGCTTGCTATAGGAAAGCTAAAAACATTACTACAAAGGGGGGAAAAGCATGAAAAAGACAA
AAGAAGTATTTGA

Upstream 100 bases:

>100_bases
TAGAATAATTTGATGAGATTATATAACTAAGAAAAATAATATGATTAAATTTAAACTTTTTATAGAGCTATATCGTATTA
CTTATAGAGGGGGGATAATT

Downstream 100 bases:

>100_bases
GGATAAGGAGTTTTTAGACATTTCTAAAGAAGAAATGGAGCAGGTTATAAATACTTTTGATGATTATAGCATTGAGTATC
CTACTCAAAATGAGATAGAT

Product: sigma-70 family RNA polymerase sigma factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Subunit; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-E Factor; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma Factor RpoE; RNA Polymerase Sigma-70 Factor Ecf Subfamily; RNA Polymerase Factor Sigma C; RNA Polymerase Sigma-24 Subunit ECF Subfamily Protein; ECF Family RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Subunit Ecf Family; RNA Polymerase Sigma Factor SigY; RNA Polymerase Sigma Factor AlgU; RNA Polymerase Sigma Factor SigW; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma Factor; ECF Family Sigma Factor; DNA-Directed RNA Polymerase ECF-Type Sigma Factor; Sigma-70 Family; RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase Sigma-70 Factor ECF Subfamily Protein; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase ECF-Type Sigma Factor Family Protein; RNA Polymerase Sigma-70 Factor ECF Family Protein; RNA Polymerase Sigma-24 Subunit Rpoe; DNA-Directed RNA Polymerase Sigma Subunit; ECF Subfamily Factor; RNA Polymerase Sigma-W Factor; ECF Family RNA Polymerase Sigma Factor; Sigma Factor-Related Protein; RNA Polymerase Sigma; RNA Polymerase Sigma-H Factor

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MGLSDEELVNEIISGNRSAMEVLVNRNYKLVYAFIYRNIGEYHTTLDLTQESFIKIMKSLKMFKSHKGNFQCWILKIALN
VCKDYWKSAYIKHNTVDDSSLEKVYEKGNIINYLEKIEERQEIKKAMMALSEEQREVIILRYYNDLKIRDIANITEIKES
TVKSRLRLAIGKLKTLLQRGEKHEKDKRSI

Sequences:

>Translated_190_residues
MGLSDEELVNEIISGNRSAMEVLVNRNYKLVYAFIYRNIGEYHTTLDLTQESFIKIMKSLKMFKSHKGNFQCWILKIALN
VCKDYWKSAYIKHNTVDDSSLEKVYEKGNIINYLEKIEERQEIKKAMMALSEEQREVIILRYYNDLKIRDIANITEIKES
TVKSRLRLAIGKLKTLLQRGEKHEKDKRSI
>Mature_189_residues
GLSDEELVNEIISGNRSAMEVLVNRNYKLVYAFIYRNIGEYHTTLDLTQESFIKIMKSLKMFKSHKGNFQCWILKIALNV
CKDYWKSAYIKHNTVDDSSLEKVYEKGNIINYLEKIEERQEIKKAMMALSEEQREVIILRYYNDLKIRDIANITEIKEST
VKSRLRLAIGKLKTLLQRGEKHEKDKRSI

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788926, Length=189, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22429; Mature: 22298

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLSDEELVNEIISGNRSAMEVLVNRNYKLVYAFIYRNIGEYHTTLDLTQESFIKIMKSL
CCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KMFKSHKGNFQCWILKIALNVCKDYWKSAYIKHNTVDDSSLEKVYEKGNIINYLEKIEER
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
QEIKKAMMALSEEQREVIILRYYNDLKIRDIANITEIKESTVKSRLRLAIGKLKTLLQRG
HHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EKHEKDKRSI
HHCCHHHCCC
>Mature Secondary Structure 
GLSDEELVNEIISGNRSAMEVLVNRNYKLVYAFIYRNIGEYHTTLDLTQESFIKIMKSL
CCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KMFKSHKGNFQCWILKIALNVCKDYWKSAYIKHNTVDDSSLEKVYEKGNIINYLEKIEER
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
QEIKKAMMALSEEQREVIILRYYNDLKIRDIANITEIKESTVKSRLRLAIGKLKTLLQRG
HHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EKHEKDKRSI
HHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA