Click here to switch to the map view.

The map label for this gene is 226950662

Identifier: 226950662

GI number: 226950662

Start: 3686430

End: 3687242

Strand: Reverse

Name: 226950662

Synonym: CLM_3646

Alternate gene names: NA

Gene position: 3687242-3686430 (Counterclockwise)

Preceding gene: 226950663

Following gene: 226950661

Centisome position: 88.74

GC content: 23.25

Gene sequence:

>813_bases
GTGGCAAAACCAAGTATTTTTAGCAAAGATTATGAAAGAAGAATGAAAAGAAGAAAAAGAAGAACTTTTTTTTCAGTTAT
AGTTATAATATTAATTTCTTTAGTAATAATATTTACCAACAATGGTATTGGTAAAAAAATAAAAAATAGTTTAAATCAAA
TAAAAGAAGAAACTAAGGCTGAAGAAGAACAAAAAAATAAACAACAAGAACAAAAGGAAAATAAAAAAGAAAATGAAAAT
AAAAATGCAGCCACAGTAAAAAAAGAAAGTGAAGTTCCTAAAGATAATAATATAGAAGTTCAATTAGAAGACAATATGAA
AATAAAGTTGATATATATAGAAGATAGTAATAAAAATAAGACTATTAAATCTATAGATTTAAATAAAAATAATTTATTAT
ATGATATAAATCCTTCAAAAAATTCAATAGTTGTAACTAATCCTAAAACTCAAAATATTTATTTAGTAAATTTAAATGGT
GAAAAGCAAGATATAACAAATAAGCAGTATACATCAACATCTGGAACAACTTTTCAAAAGGATGCTATATTAGCATCAAA
GCAAGATTATTTATGGGGAGTTTTACCTAAATTTATAGATAATGATAATATAGCTTATGTTTCTCAACTACCATGGTTCA
ATAAGACCACTAAATATGTATGGATGTATAATATAAAAAATAAAACTCATTTATACAATCAAAACATATCAGGAGAAGAC
ATTAAGTTTGATAAATTAACAGAAAAAGGACTTACAGTAGTTTCAGATGGGAGAACTTTATTTTTGAAAGCAGATGGAAA
TATATCCCAGTAA

Upstream 100 bases:

>100_bases
AATTTTTATTGTTTTGAGTTATAATAGTGTTGAATATATAATAATTGATACATTTTATTTATTTTAGTATAGATAGGCAT
TATATATAGGAGGAATTATT

Downstream 100 bases:

>100_bases
ATTAAAAAATATTGAATAAATAAAATGAAACTAAAATTAATGGAGATATAAGAGTTTTAAGAGTGTATTAAGTGTGTACA
CTCTTGCTTTATTTGAGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MAKPSIFSKDYERRMKRRKRRTFFSVIVIILISLVIIFTNNGIGKKIKNSLNQIKEETKAEEEQKNKQQEQKENKKENEN
KNAATVKKESEVPKDNNIEVQLEDNMKIKLIYIEDSNKNKTIKSIDLNKNNLLYDINPSKNSIVVTNPKTQNIYLVNLNG
EKQDITNKQYTSTSGTTFQKDAILASKQDYLWGVLPKFIDNDNIAYVSQLPWFNKTTKYVWMYNIKNKTHLYNQNISGED
IKFDKLTEKGLTVVSDGRTLFLKADGNISQ

Sequences:

>Translated_270_residues
MAKPSIFSKDYERRMKRRKRRTFFSVIVIILISLVIIFTNNGIGKKIKNSLNQIKEETKAEEEQKNKQQEQKENKKENEN
KNAATVKKESEVPKDNNIEVQLEDNMKIKLIYIEDSNKNKTIKSIDLNKNNLLYDINPSKNSIVVTNPKTQNIYLVNLNG
EKQDITNKQYTSTSGTTFQKDAILASKQDYLWGVLPKFIDNDNIAYVSQLPWFNKTTKYVWMYNIKNKTHLYNQNISGED
IKFDKLTEKGLTVVSDGRTLFLKADGNISQ
>Mature_269_residues
AKPSIFSKDYERRMKRRKRRTFFSVIVIILISLVIIFTNNGIGKKIKNSLNQIKEETKAEEEQKNKQQEQKENKKENENK
NAATVKKESEVPKDNNIEVQLEDNMKIKLIYIEDSNKNKTIKSIDLNKNNLLYDINPSKNSIVVTNPKTQNIYLVNLNGE
KQDITNKQYTSTSGTTFQKDAILASKQDYLWGVLPKFIDNDNIAYVSQLPWFNKTTKYVWMYNIKNKTHLYNQNISGEDI
KFDKLTEKGLTVVSDGRTLFLKADGNISQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31341; Mature: 31210

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKPSIFSKDYERRMKRRKRRTFFSVIVIILISLVIIFTNNGIGKKIKNSLNQIKEETKA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
EEEQKNKQQEQKENKKENENKNAATVKKESEVPKDNNIEVQLEDNMKIKLIYIEDSNKNK
HHHHHHHHHHHHHHHHHCCCCCCEEEEHHHCCCCCCCEEEEECCCCEEEEEEEECCCCCC
TIKSIDLNKNNLLYDINPSKNSIVVTNPKTQNIYLVNLNGEKQDITNKQYTSTSGTTFQK
EEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCHHHCCCCEECCCCCCEEEC
DAILASKQDYLWGVLPKFIDNDNIAYVSQLPWFNKTTKYVWMYNIKNKTHLYNQNISGED
CHHEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCCEEEECCCCCCCC
IKFDKLTEKGLTVVSDGRTLFLKADGNISQ
EEHHHHHCCCCEEEECCCEEEEEECCCCCC
>Mature Secondary Structure 
AKPSIFSKDYERRMKRRKRRTFFSVIVIILISLVIIFTNNGIGKKIKNSLNQIKEETKA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
EEEQKNKQQEQKENKKENENKNAATVKKESEVPKDNNIEVQLEDNMKIKLIYIEDSNKNK
HHHHHHHHHHHHHHHHHCCCCCCEEEEHHHCCCCCCCEEEEECCCCEEEEEEEECCCCCC
TIKSIDLNKNNLLYDINPSKNSIVVTNPKTQNIYLVNLNGEKQDITNKQYTSTSGTTFQK
EEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCHHHCCCCEECCCCCCEEEC
DAILASKQDYLWGVLPKFIDNDNIAYVSQLPWFNKTTKYVWMYNIKNKTHLYNQNISGED
CHHEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCCEEEECCCCCCCC
IKFDKLTEKGLTVVSDGRTLFLKADGNISQ
EEHHHHHCCCCEEEECCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA