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The map label for this gene is yhaM [H]

Identifier: 226950634

GI number: 226950634

Start: 3657373

End: 3658269

Strand: Reverse

Name: yhaM [H]

Synonym: CLM_3618

Alternate gene names: 226950634

Gene position: 3658269-3657373 (Counterclockwise)

Preceding gene: 226950635

Following gene: 226950633

Centisome position: 88.04

GC content: 28.09

Gene sequence:

>897_bases
ATGAAAGGAATATACATAAAAGGGGCAAAGCACGGTGAAAAAATAAATTCTCAATTTATGATACTAAAGAAAATATATAA
AGATGGAGATAGCATTATAGCTTATATGGGAGATAAAACTGGAGACATCAAAGTTAAAATTTTAGATAAAAAAGGCGTTT
TAGATGCAGGGGATGTTATAGAATGTAGTTTTATATTTTCTAATAACAGTGAAATATTAAATTTTAAAAAAATAGATGAA
TTTTTATTGGAAGATTTTTTACCTACCGTAGATAGACCTATAGAAGAAATAATGAATGAAATAGAACAAATATCAAAAGA
TGAATTCAAGAGCAAAGAGTGTATAGAACTAAATAATTATTTTTTTAAAGACCAAGAATTTTTAGATAAATTTAAAAAAG
GAATAGGTGGGGTAAGTCAACATCATAATTATATAGGCGGATTAGCAGAACATACATTGAATGTAATGTATTTAGCTAAA
ATGTTATGTTATAGATATAATGTTAAAAATAAGGAATTAACTATATTATCAGCCAAACTTCATGATATAGGGAAAACAGA
GGAACTAAGTACTAATGGTCCCTTTACTTACACACTGAAAGGAGAGATGGAAGGACATATAGTTATAGGTGCAGAAATGC
TTCAGAGAGCATTCAATGATAATATAGAAGCATATAGTGAAGATTTCAAACAAAGAGTAAAAGCCTGCATAATTCAGCAT
CATGGAAAAGTAGAATATGGTTCTCCAAGATCTCCAAAGTTAGAAGAAAGTTATGTGGTTCATTATGCGGATTATATAGA
TGCTAATATGAATAAAATAGCTATAGTAAAAAAGGATGTAGAGGAAAATACTTGGAGTCAATATGACAGAAGAATTGAAG
GAAAGATTTATGTATAA

Upstream 100 bases:

>100_bases
AAAAAATTAGGGAAGAATAAAAAAAGTAAATAAGATAAAGAATAAAGGTGATTTTATATTACCTTTATTTTTTACAAAAT
ATAAAAGGAGAGCTGATACT

Downstream 100 bases:

>100_bases
TATATTAAAAATATAGTAATATTGAATATAGAAAAATATTAAATACTTTATATTTTTTACTGTTGGTAGGTTTGTTCTAC
CAGCAGCTTTTGTTTTTTTA

Product: HDIG domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MKGIYIKGAKHGEKINSQFMILKKIYKDGDSIIAYMGDKTGDIKVKILDKKGVLDAGDVIECSFIFSNNSEILNFKKIDE
FLLEDFLPTVDRPIEEIMNEIEQISKDEFKSKECIELNNYFFKDQEFLDKFKKGIGGVSQHHNYIGGLAEHTLNVMYLAK
MLCYRYNVKNKELTILSAKLHDIGKTEELSTNGPFTYTLKGEMEGHIVIGAEMLQRAFNDNIEAYSEDFKQRVKACIIQH
HGKVEYGSPRSPKLEESYVVHYADYIDANMNKIAIVKKDVEENTWSQYDRRIEGKIYV

Sequences:

>Translated_298_residues
MKGIYIKGAKHGEKINSQFMILKKIYKDGDSIIAYMGDKTGDIKVKILDKKGVLDAGDVIECSFIFSNNSEILNFKKIDE
FLLEDFLPTVDRPIEEIMNEIEQISKDEFKSKECIELNNYFFKDQEFLDKFKKGIGGVSQHHNYIGGLAEHTLNVMYLAK
MLCYRYNVKNKELTILSAKLHDIGKTEELSTNGPFTYTLKGEMEGHIVIGAEMLQRAFNDNIEAYSEDFKQRVKACIIQH
HGKVEYGSPRSPKLEESYVVHYADYIDANMNKIAIVKKDVEENTWSQYDRRIEGKIYV
>Mature_298_residues
MKGIYIKGAKHGEKINSQFMILKKIYKDGDSIIAYMGDKTGDIKVKILDKKGVLDAGDVIECSFIFSNNSEILNFKKIDE
FLLEDFLPTVDRPIEEIMNEIEQISKDEFKSKECIELNNYFFKDQEFLDKFKKGIGGVSQHHNYIGGLAEHTLNVMYLAK
MLCYRYNVKNKELTILSAKLHDIGKTEELSTNGPFTYTLKGEMEGHIVIGAEMLQRAFNDNIEAYSEDFKQRVKACIIQH
HGKVEYGSPRSPKLEESYVVHYADYIDANMNKIAIVKKDVEENTWSQYDRRIEGKIYV

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yhaM family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 34360; Mature: 34360

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGIYIKGAKHGEKINSQFMILKKIYKDGDSIIAYMGDKTGDIKVKILDKKGVLDAGDVI
CCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCEE
ECSFIFSNNSEILNFKKIDEFLLEDFLPTVDRPIEEIMNEIEQISKDEFKSKECIELNNY
EEEEEEECCCCEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEECCCC
FFKDQEFLDKFKKGIGGVSQHHNYIGGLAEHTLNVMYLAKMLCYRYNVKNKELTILSAKL
EECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEH
HDIGKTEELSTNGPFTYTLKGEMEGHIVIGAEMLQRAFNDNIEAYSEDFKQRVKACIIQH
HCCCCCCCCCCCCCEEEEEECCCCCEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
HGKVEYGSPRSPKLEESYVVHYADYIDANMNKIAIVKKDVEENTWSQYDRRIEGKIYV
CCCCCCCCCCCCCCCHHHEEEEHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCEEEC
>Mature Secondary Structure
MKGIYIKGAKHGEKINSQFMILKKIYKDGDSIIAYMGDKTGDIKVKILDKKGVLDAGDVI
CCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCEE
ECSFIFSNNSEILNFKKIDEFLLEDFLPTVDRPIEEIMNEIEQISKDEFKSKECIELNNY
EEEEEEECCCCEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEECCCC
FFKDQEFLDKFKKGIGGVSQHHNYIGGLAEHTLNVMYLAKMLCYRYNVKNKELTILSAKL
EECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEH
HDIGKTEELSTNGPFTYTLKGEMEGHIVIGAEMLQRAFNDNIEAYSEDFKQRVKACIIQH
HCCCCCCCCCCCCCEEEEEECCCCCEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
HGKVEYGSPRSPKLEESYVVHYADYIDANMNKIAIVKKDVEENTWSQYDRRIEGKIYV
CCCCCCCCCCCCCCCHHHEEEEHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA