Click here to switch to the map view.

The map label for this gene is 226950596

Identifier: 226950596

GI number: 226950596

Start: 3611589

End: 3614084

Strand: Reverse

Name: 226950596

Synonym: CLM_3579

Alternate gene names: NA

Gene position: 3614084-3611589 (Counterclockwise)

Preceding gene: 226950598

Following gene: 226950595

Centisome position: 86.98

GC content: 30.17

Gene sequence:

>2496_bases
ATGAAAAAACCAAAGATGCAAATATTATTTGCTATTTCTATTATACTAATTTCTTGCTTACCTGTTATCACAAATGAGGG
ACAAAGTTATACCATATTCCAATTGCTGGCGGGAAATGTTAAAACGATGAATCCTGTGATACCAACTCAAGTTCCAGCAG
TTTTATTGCTTATTACACCAATCCAGTATTTAATACATATGATTTTGCTTATAAGAAATAACACTGATAGGTATGAGGTG
GTTATTCTATACTTAAGTTTACTAACTACAGTATTAGGGATTATTTGTATTTTATTGTGTGGAATAGGAGAAAATAGTGA
ATTTGCTGTATGGGTATGGCTTAGAATGGTTGTCGTTTTCATTGCATATGTGTCACCTAGAGTGTATGAATCATTTCAGG
ATTTTAAGCAAAACGAGAAAGTGCAAAAGTTAGAAGAGCAAAATAAAAGGGTAGGAGAAAAGGAAAAGCAAAGAGAAGAT
GCTAAATATATGAAACGTATTAAAAAGAATCCATATCTTAAAAAGATTCTTTGGAAAATTTATAAAAGTAACATGAGAAA
TTCTATACTGTTAGTTACAGGAGCTATTATTTCCAGTGCATTTTTATTTACTACTATTGCAGTTTATGAGATGTTTTATG
ATTTACAAAAAGGGAATGTTCCAGTAGTAGGAGATGAATTATCAGTCTTATTATGGGATGCAATTATTTTAATCGGTATT
ATATCTATTTTCTTATTAGCACTTTCTTTAAAAATATATGTAAAAAGTAGAATCAAAGATTATAATTTAATGATTACTTT
AGGAATGCGAAATAGGGTTTTACGATTTTTTATTGCAACTGAGTATACAGGAAGTTTAGCAGTAGGATTATTGATCGGGA
TTTTCATAGGTAGTCTTTTGACAATTGGATTTCAGAGCGTTATACATTGTATATATCCAACGTTTATTTCAATAGAGCTT
CCTGGTATTAAAACTTATTTCATAGCGTGTTTTTATATTATTTTATTATTTTTAGTTTCAACTTTTATAAATCACAAAAT
TTATGTTGAAATGGAATTGGGATCTTCACGACAGATACCTGTATCAAAAGAGAATATGCCAAATAGATGGTTAGGAATTA
AATGTGTTGTAGGAACAATATTGATGTTGTTTTCCAGCTATACATTTTCTAAGCGTGTATGGACAGAGTCTATTTATCTT
ATTATTATGTTTTTGGTTGGATGTTATATGATCATTAGTGCAGGAGGAGCATGGATTTTAAAAAGTTATAGAAAGAAGGG
AAATGGATATTATAAAAGACTTCCATTTTTACAGCAGTTTTATAGTAGATTTAAGACACATAGAAGTAATTTGTTTATGG
TATACATTCTTCATTTTTTATTAATAGGGTATTTTTCTATAAGGATATCAGGAGTGCTTCCCCTTGATAGAGTACAGGCG
TTGTTTCCTTATTATTATGTGTGTTTAGGAGAAAAAGAGGATCAAGAAACTTTTAAAGAATTTCAGAAAAAACTTTCTGA
GAAGAGCCTAATACTTCCTATGGTACGAGCCACAGTTGTCAGTGCAAGTGAAAAAAATAGTGGAAGTAGAATGGATATAA
GTTTTCAGGGGCAGAACATAGGTATTTCAGAGAGTAGTTATAATCAATTGACTGGAAGAAAATTAGGGCTCCGAAATAAA
GAAATTTATATTTCCTTTCAACAGGATAAATCAGAAAAGGCGCATTTGCTAGATTTTTCAGTATTAAGTGGTAGTCCGAG
AATGAGATTTGGAATGCCAGAACCTTATTTTTTTGAAGAGAGAGATAAAATTTTTGATTCAGATTATAAGGTTATAGGAC
AAGAACGTAGAATTATTGTTGGAAACCTGGTAGGAGGAATGCAGGAGAATATTGTTGTTTTTTCTGATGAATATTTTAAA
TCAATATATTCTACTGGTGATGGGCCGAGTATATTGGCATTGTTTAATATAAACAAAGACAAAGAGGAAGAAGCAGCTGT
AAAATTTTCAGATTATGCAAAAGATCATATACAATATAGTGAATATGATTCACTTATTCAGCCTATATATGGGAAAAAAG
TTTTACAAAACAACACCTTATTAGCTCATATGTTAAAATTGTTGGAATATCTATTCGTAATGACATTATTGTTGGTTAGC
ATATTATATGTTTTCGTTGTAAAGATGGTTTCAGAGTTGCCAGACACACGATCTAGAATGAAGCAGTTTAAATATTTAGG
TATGAGGGAAGGATTGGATAGAAAAATTTTGGCATTTGAAAATAATGTTATGACAATTATGCCATTGGTATTGGCAATAG
TAGCGAGCTTCTCATATATTTTTATTACTTTAAAGGTTCGCTATTTCACAAAGATAGAACAACAGGAATTTTGGCAATAT
GAGGTATGGATTATAGGAGTTTATACTATTATAAATTTAATTGTAGCATTTATAATAGGTAGAGTTATGATTTGTCTTGG
AAATAGGGAGGAATGA

Upstream 100 bases:

>100_bases
AGAGAGAATATATGAATGTTGTGAAAGAGTGTCTAGAAAAGTTTTATAGATAAAAAGTAATAAAGAATAGAATTTTATAA
TGTTTTGGGGGATGAATATT

Downstream 100 bases:

>100_bases
TTATGGCAGTGATAGAAACAAACAATTTGGTTCGTAATTATAAATTAAATGGAAGTAATCTGAATGAGGGGACCGAGGTA
AAGGTAATAAAAGGACTAGA

Product: putative ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 831; Mature: 831

Protein sequence:

>831_residues
MKKPKMQILFAISIILISCLPVITNEGQSYTIFQLLAGNVKTMNPVIPTQVPAVLLLITPIQYLIHMILLIRNNTDRYEV
VILYLSLLTTVLGIICILLCGIGENSEFAVWVWLRMVVVFIAYVSPRVYESFQDFKQNEKVQKLEEQNKRVGEKEKQRED
AKYMKRIKKNPYLKKILWKIYKSNMRNSILLVTGAIISSAFLFTTIAVYEMFYDLQKGNVPVVGDELSVLLWDAIILIGI
ISIFLLALSLKIYVKSRIKDYNLMITLGMRNRVLRFFIATEYTGSLAVGLLIGIFIGSLLTIGFQSVIHCIYPTFISIEL
PGIKTYFIACFYIILLFLVSTFINHKIYVEMELGSSRQIPVSKENMPNRWLGIKCVVGTILMLFSSYTFSKRVWTESIYL
IIMFLVGCYMIISAGGAWILKSYRKKGNGYYKRLPFLQQFYSRFKTHRSNLFMVYILHFLLIGYFSIRISGVLPLDRVQA
LFPYYYVCLGEKEDQETFKEFQKKLSEKSLILPMVRATVVSASEKNSGSRMDISFQGQNIGISESSYNQLTGRKLGLRNK
EIYISFQQDKSEKAHLLDFSVLSGSPRMRFGMPEPYFFEERDKIFDSDYKVIGQERRIIVGNLVGGMQENIVVFSDEYFK
SIYSTGDGPSILALFNINKDKEEEAAVKFSDYAKDHIQYSEYDSLIQPIYGKKVLQNNTLLAHMLKLLEYLFVMTLLLVS
ILYVFVVKMVSELPDTRSRMKQFKYLGMREGLDRKILAFENNVMTIMPLVLAIVASFSYIFITLKVRYFTKIEQQEFWQY
EVWIIGVYTIINLIVAFIIGRVMICLGNREE

Sequences:

>Translated_831_residues
MKKPKMQILFAISIILISCLPVITNEGQSYTIFQLLAGNVKTMNPVIPTQVPAVLLLITPIQYLIHMILLIRNNTDRYEV
VILYLSLLTTVLGIICILLCGIGENSEFAVWVWLRMVVVFIAYVSPRVYESFQDFKQNEKVQKLEEQNKRVGEKEKQRED
AKYMKRIKKNPYLKKILWKIYKSNMRNSILLVTGAIISSAFLFTTIAVYEMFYDLQKGNVPVVGDELSVLLWDAIILIGI
ISIFLLALSLKIYVKSRIKDYNLMITLGMRNRVLRFFIATEYTGSLAVGLLIGIFIGSLLTIGFQSVIHCIYPTFISIEL
PGIKTYFIACFYIILLFLVSTFINHKIYVEMELGSSRQIPVSKENMPNRWLGIKCVVGTILMLFSSYTFSKRVWTESIYL
IIMFLVGCYMIISAGGAWILKSYRKKGNGYYKRLPFLQQFYSRFKTHRSNLFMVYILHFLLIGYFSIRISGVLPLDRVQA
LFPYYYVCLGEKEDQETFKEFQKKLSEKSLILPMVRATVVSASEKNSGSRMDISFQGQNIGISESSYNQLTGRKLGLRNK
EIYISFQQDKSEKAHLLDFSVLSGSPRMRFGMPEPYFFEERDKIFDSDYKVIGQERRIIVGNLVGGMQENIVVFSDEYFK
SIYSTGDGPSILALFNINKDKEEEAAVKFSDYAKDHIQYSEYDSLIQPIYGKKVLQNNTLLAHMLKLLEYLFVMTLLLVS
ILYVFVVKMVSELPDTRSRMKQFKYLGMREGLDRKILAFENNVMTIMPLVLAIVASFSYIFITLKVRYFTKIEQQEFWQY
EVWIIGVYTIINLIVAFIIGRVMICLGNREE
>Mature_831_residues
MKKPKMQILFAISIILISCLPVITNEGQSYTIFQLLAGNVKTMNPVIPTQVPAVLLLITPIQYLIHMILLIRNNTDRYEV
VILYLSLLTTVLGIICILLCGIGENSEFAVWVWLRMVVVFIAYVSPRVYESFQDFKQNEKVQKLEEQNKRVGEKEKQRED
AKYMKRIKKNPYLKKILWKIYKSNMRNSILLVTGAIISSAFLFTTIAVYEMFYDLQKGNVPVVGDELSVLLWDAIILIGI
ISIFLLALSLKIYVKSRIKDYNLMITLGMRNRVLRFFIATEYTGSLAVGLLIGIFIGSLLTIGFQSVIHCIYPTFISIEL
PGIKTYFIACFYIILLFLVSTFINHKIYVEMELGSSRQIPVSKENMPNRWLGIKCVVGTILMLFSSYTFSKRVWTESIYL
IIMFLVGCYMIISAGGAWILKSYRKKGNGYYKRLPFLQQFYSRFKTHRSNLFMVYILHFLLIGYFSIRISGVLPLDRVQA
LFPYYYVCLGEKEDQETFKEFQKKLSEKSLILPMVRATVVSASEKNSGSRMDISFQGQNIGISESSYNQLTGRKLGLRNK
EIYISFQQDKSEKAHLLDFSVLSGSPRMRFGMPEPYFFEERDKIFDSDYKVIGQERRIIVGNLVGGMQENIVVFSDEYFK
SIYSTGDGPSILALFNINKDKEEEAAVKFSDYAKDHIQYSEYDSLIQPIYGKKVLQNNTLLAHMLKLLEYLFVMTLLLVS
ILYVFVVKMVSELPDTRSRMKQFKYLGMREGLDRKILAFENNVMTIMPLVLAIVASFSYIFITLKVRYFTKIEQQEFWQY
EVWIIGVYTIINLIVAFIIGRVMICLGNREE

Specific function: Unknown

COG id: COG0577

COG function: function code V; ABC-type antimicrobial peptide transport system, permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 96075; Mature: 96075

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKPKMQILFAISIILISCLPVITNEGQSYTIFQLLAGNVKTMNPVIPTQVPAVLLLITP
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
IQYLIHMILLIRNNTDRYEVVILYLSLLTTVLGIICILLCGIGENSEFAVWVWLRMVVVF
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
IAYVSPRVYESFQDFKQNEKVQKLEEQNKRVGEKEKQREDAKYMKRIKKNPYLKKILWKI
HHHHCHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
YKSNMRNSILLVTGAIISSAFLFTTIAVYEMFYDLQKGNVPVVGDELSVLLWDAIILIGI
HHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHH
ISIFLLALSLKIYVKSRIKDYNLMITLGMRNRVLRFFIATEYTGSLAVGLLIGIFIGSLL
HHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
TIGFQSVIHCIYPTFISIELPGIKTYFIACFYIILLFLVSTFINHKIYVEMELGSSRQIP
HHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCC
VSKENMPNRWLGIKCVVGTILMLFSSYTFSKRVWTESIYLIIMFLVGCYMIISAGGAWIL
CCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
KSYRKKGNGYYKRLPFLQQFYSRFKTHRSNLFMVYILHFLLIGYFSIRISGVLPLDRVQA
HHHHHCCCCHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEECCCCHHHHHH
LFPYYYVCLGEKEDQETFKEFQKKLSEKSLILPMVRATVVSASEKNSGSRMDISFQGQNI
HHHHHHEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
GISESSYNQLTGRKLGLRNKEIYISFQQDKSEKAHLLDFSVLSGSPRMRFGMPEPYFFEE
CCCCCCHHHHCCCCCCCCCCEEEEEEECCCCCCHHEEEEHEECCCCCEECCCCCCCCCCC
RDKIFDSDYKVIGQERRIIVGNLVGGMQENIVVFSDEYFKSIYSTGDGPSILALFNINKD
HHHHCCCCHHHHCCCCCEEEEHHHCCCCCCEEEECHHHHHHHHCCCCCCCEEEEEECCCC
KEEEAAVKFSDYAKDHIQYSEYDSLIQPIYGKKVLQNNTLLAHMLKLLEYLFVMTLLLVS
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ILYVFVVKMVSELPDTRSRMKQFKYLGMREGLDRKILAFENNVMTIMPLVLAIVASFSYI
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
FITLKVRYFTKIEQQEFWQYEVWIIGVYTIINLIVAFIIGRVMICLGNREE
HEEEEHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKKPKMQILFAISIILISCLPVITNEGQSYTIFQLLAGNVKTMNPVIPTQVPAVLLLITP
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
IQYLIHMILLIRNNTDRYEVVILYLSLLTTVLGIICILLCGIGENSEFAVWVWLRMVVVF
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
IAYVSPRVYESFQDFKQNEKVQKLEEQNKRVGEKEKQREDAKYMKRIKKNPYLKKILWKI
HHHHCHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
YKSNMRNSILLVTGAIISSAFLFTTIAVYEMFYDLQKGNVPVVGDELSVLLWDAIILIGI
HHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHH
ISIFLLALSLKIYVKSRIKDYNLMITLGMRNRVLRFFIATEYTGSLAVGLLIGIFIGSLL
HHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
TIGFQSVIHCIYPTFISIELPGIKTYFIACFYIILLFLVSTFINHKIYVEMELGSSRQIP
HHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCC
VSKENMPNRWLGIKCVVGTILMLFSSYTFSKRVWTESIYLIIMFLVGCYMIISAGGAWIL
CCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
KSYRKKGNGYYKRLPFLQQFYSRFKTHRSNLFMVYILHFLLIGYFSIRISGVLPLDRVQA
HHHHHCCCCHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEECCCCHHHHHH
LFPYYYVCLGEKEDQETFKEFQKKLSEKSLILPMVRATVVSASEKNSGSRMDISFQGQNI
HHHHHHEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
GISESSYNQLTGRKLGLRNKEIYISFQQDKSEKAHLLDFSVLSGSPRMRFGMPEPYFFEE
CCCCCCHHHHCCCCCCCCCCEEEEEEECCCCCCHHEEEEHEECCCCCEECCCCCCCCCCC
RDKIFDSDYKVIGQERRIIVGNLVGGMQENIVVFSDEYFKSIYSTGDGPSILALFNINKD
HHHHCCCCHHHHCCCCCEEEEHHHCCCCCCEEEECHHHHHHHHCCCCCCCEEEEEECCCC
KEEEAAVKFSDYAKDHIQYSEYDSLIQPIYGKKVLQNNTLLAHMLKLLEYLFVMTLLLVS
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ILYVFVVKMVSELPDTRSRMKQFKYLGMREGLDRKILAFENNVMTIMPLVLAIVASFSYI
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
FITLKVRYFTKIEQQEFWQYEVWIIGVYTIINLIVAFIIGRVMICLGNREE
HEEEEHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA