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The map label for this gene is 226950283

Identifier: 226950283

GI number: 226950283

Start: 3266283

End: 3267059

Strand: Reverse

Name: 226950283

Synonym: CLM_3245

Alternate gene names: NA

Gene position: 3267059-3266283 (Counterclockwise)

Preceding gene: 226950284

Following gene: 226950282

Centisome position: 78.62

GC content: 33.46

Gene sequence:

>777_bases
TTGCAGGAGGTGAGGAATATAAATGACATTTTTATGTGGGGACGAAATTTTGGTGCTGTAACTAATATGGTCAAAGCAGA
TGTGCATAAGCATTGGATGATACAATTGTTTGTTGGTAATGGTGAAAATTTGGAGATTAATGTAAATGATCAAAAAATAC
ATTGTCGCGCCATTGTTGTTAATATGAATACAAAGCATATGTTTTATTCTAGAAACCTAATTCACTTTACGATGCTAATC
AATCCAACTACTCAATTAGGAAGAACAATGCGAGTACATTTTTTAAATGAAAAACCCTATTATATTTTATGTGAAGACAT
AGCAGTTGAATTGCAAAAGCAACTTATAAGCGCTATTAGTATGGGTGAAAACACTGACTATTCAGAGATTATAAGAAATG
TTGTCTATTGTTTCAAAAATGATAACCTCAATGGATATGATGAAAGAATTGAGATAATATTAAGAAGGATAGACACCTGC
GCTTGCGAAGAGGAAAAACATCAGGTGAAACAAATAGCAAAGGAAATGGCTATATCTGAAAGTAGACTATCTCATCTTTT
CAAAGAAGAAACCGGTATTCCGCTGAAAAGTTATATTGTTCTTCACAAGTTGCTAAGAGCGTATGAAAAGATACTTGACG
GTGAAAGTATTACAGCTGCAGCAATAGCGGCAGGATTTGATTCCGCTGCACATTTGGCATTTACTAATAAAAAAATGACT
GGAATGTCAGCAAGGGGAATTATGAAGGAAAGCAGATTTTTGAAAGTAATTCTATAA

Upstream 100 bases:

>100_bases
AGTAAAATGCATAAGGTGGTAGCTGATAATATAATTTCTAAAGGCTATAATAGAAGGGAATGTAATAATTCTTATGAAGA
GATTATTTATATAATATGTA

Downstream 100 bases:

>100_bases
ATGAATTGCTATAATATGACTATACTAAAAAGCAGGAGGTCATATTATGAAAAAGTATTTACAGACAACACATATGTTGG
ATTTTAATTGCAATGAGATA

Product: helix-turn-helix- domain-containing protein, AraC type

Products: NA

Alternate protein names: Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix AraC Domain

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MQEVRNINDIFMWGRNFGAVTNMVKADVHKHWMIQLFVGNGENLEINVNDQKIHCRAIVVNMNTKHMFYSRNLIHFTMLI
NPTTQLGRTMRVHFLNEKPYYILCEDIAVELQKQLISAISMGENTDYSEIIRNVVYCFKNDNLNGYDERIEIILRRIDTC
ACEEEKHQVKQIAKEMAISESRLSHLFKEETGIPLKSYIVLHKLLRAYEKILDGESITAAAIAAGFDSAAHLAFTNKKMT
GMSARGIMKESRFLKVIL

Sequences:

>Translated_258_residues
MQEVRNINDIFMWGRNFGAVTNMVKADVHKHWMIQLFVGNGENLEINVNDQKIHCRAIVVNMNTKHMFYSRNLIHFTMLI
NPTTQLGRTMRVHFLNEKPYYILCEDIAVELQKQLISAISMGENTDYSEIIRNVVYCFKNDNLNGYDERIEIILRRIDTC
ACEEEKHQVKQIAKEMAISESRLSHLFKEETGIPLKSYIVLHKLLRAYEKILDGESITAAAIAAGFDSAAHLAFTNKKMT
GMSARGIMKESRFLKVIL
>Mature_258_residues
MQEVRNINDIFMWGRNFGAVTNMVKADVHKHWMIQLFVGNGENLEINVNDQKIHCRAIVVNMNTKHMFYSRNLIHFTMLI
NPTTQLGRTMRVHFLNEKPYYILCEDIAVELQKQLISAISMGENTDYSEIIRNVVYCFKNDNLNGYDERIEIILRRIDTC
ACEEEKHQVKQIAKEMAISESRLSHLFKEETGIPLKSYIVLHKLLRAYEKILDGESITAAAIAAGFDSAAHLAFTNKKMT
GMSARGIMKESRFLKVIL

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29760; Mature: 29760

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEVRNINDIFMWGRNFGAVTNMVKADVHKHWMIQLFVGNGENLEINVNDQKIHCRAIVV
CCCHHCCHHHEEECCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEEECCCEEEEEEEEE
NMNTKHMFYSRNLIHFTMLINPTTQLGRTMRVHFLNEKPYYILCEDIAVELQKQLISAIS
ECCCCEEEEECCEEEEEEEECCHHHHCCEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHH
MGENTDYSEIIRNVVYCFKNDNLNGYDERIEIILRRIDTCACEEEKHQVKQIAKEMAISE
CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
SRLSHLFKEETGIPLKSYIVLHKLLRAYEKILDGESITAAAIAAGFDSAAHLAFTNKKMT
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEECCCCC
GMSARGIMKESRFLKVIL
CCHHHHHHHHCCEEEEEC
>Mature Secondary Structure
MQEVRNINDIFMWGRNFGAVTNMVKADVHKHWMIQLFVGNGENLEINVNDQKIHCRAIVV
CCCHHCCHHHEEECCCHHHHHHHHHHHHCCEEEEEEEECCCCEEEEEECCCEEEEEEEEE
NMNTKHMFYSRNLIHFTMLINPTTQLGRTMRVHFLNEKPYYILCEDIAVELQKQLISAIS
ECCCCEEEEECCEEEEEEEECCHHHHCCEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHH
MGENTDYSEIIRNVVYCFKNDNLNGYDERIEIILRRIDTCACEEEKHQVKQIAKEMAISE
CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
SRLSHLFKEETGIPLKSYIVLHKLLRAYEKILDGESITAAAIAAGFDSAAHLAFTNKKMT
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEECCCCC
GMSARGIMKESRFLKVIL
CCHHHHHHHHCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA