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The map label for this gene is fliC [H]

Identifier: 226950107

GI number: 226950107

Start: 3056108

End: 3056926

Strand: Reverse

Name: fliC [H]

Synonym: CLM_3060

Alternate gene names: 226950107

Gene position: 3056926-3056108 (Counterclockwise)

Preceding gene: 226950108

Following gene: 226950106

Centisome position: 73.57

GC content: 28.82

Gene sequence:

>819_bases
ATGCTTATAAATAATGCTAATGTTTTAGGATCTTTTAATAGAATTACTAAACAAAAGTTTAAAAATGAAAGTGTTGTAGA
AAAGGTTTCTTCTGGAAAAAGAATAAATAGGGCCTCAGATGATGCTTCAGGTATAGCTATATCTGAAAGTTTTAAAGCCC
AAGTAAGGGGGCTTTCACAAGCTGGAAGAAATACTCAAGATGGTATTTCTATGCTCCAGACTGTGGATGCTGCATTAGAT
GATATTTCAAAACATTTATATAGAATGAAAGAAATTGCGGTGAAAGCTGCTAATGATACTTTAACAGATGAAGATAGAAA
ATTAGCACATGAAGAATTTAAAGAATTAAAGAATTCTATAGACGAAATTTCGGATAAGACAGAATTTAATAAAATAAAAC
TTTTAAAAGAAGATAAAGATCTAAATATACAAATTAAAGATAATCCATATGTAACTTATACAGTTAAGTTGCAAGCTGTA
AATACAGAAAGAATGGATATAAAAGATAGTACTGTGGATACTTTTCAGGATGCTTCTAAGGCTATATCAAGTATAGATAA
AGCATTAAATGAATTAATAAAATATAGAGTTAATACTGGAAATGATTATAATAATTTATGCCAGGCCTTTAATGATTCAA
GTAACTCAGAATTAAATCTAACAGCATCTTTATCTAGAGTAGAGGATTCTGATATGGCTTCATCTATGATGAATTTAATA
AAGGGAAATGTGCTTTCAGAGTATAATAAATCTATGCTAGTAGCAGTAAGAGAAACTACTCAAGGGATAAATGCAATAAT
AAGTAAATCGCTTCTATAG

Upstream 100 bases:

>100_bases
AAACTTTGGAAGTGTTGGGAAAAGAAACAAACATCAATAAAGATATAATATTATATTACGATAAATAATTATATTAGCTT
AATTAAAAGGGGGTGGATTT

Downstream 100 bases:

>100_bases
ATGATGAAAATATATACAAAACACAGAAATCCTATTAGTTAAAAAACAAACCTAAACAAAAAAGGGGAGAATAGAAATGG
GTGAAAATAGGAGATTTCAA

Product: flagellin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MLINNANVLGSFNRITKQKFKNESVVEKVSSGKRINRASDDASGIAISESFKAQVRGLSQAGRNTQDGISMLQTVDAALD
DISKHLYRMKEIAVKAANDTLTDEDRKLAHEEFKELKNSIDEISDKTEFNKIKLLKEDKDLNIQIKDNPYVTYTVKLQAV
NTERMDIKDSTVDTFQDASKAISSIDKALNELIKYRVNTGNDYNNLCQAFNDSSNSELNLTASLSRVEDSDMASSMMNLI
KGNVLSEYNKSMLVAVRETTQGINAIISKSLL

Sequences:

>Translated_272_residues
MLINNANVLGSFNRITKQKFKNESVVEKVSSGKRINRASDDASGIAISESFKAQVRGLSQAGRNTQDGISMLQTVDAALD
DISKHLYRMKEIAVKAANDTLTDEDRKLAHEEFKELKNSIDEISDKTEFNKIKLLKEDKDLNIQIKDNPYVTYTVKLQAV
NTERMDIKDSTVDTFQDASKAISSIDKALNELIKYRVNTGNDYNNLCQAFNDSSNSELNLTASLSRVEDSDMASSMMNLI
KGNVLSEYNKSMLVAVRETTQGINAIISKSLL
>Mature_272_residues
MLINNANVLGSFNRITKQKFKNESVVEKVSSGKRINRASDDASGIAISESFKAQVRGLSQAGRNTQDGISMLQTVDAALD
DISKHLYRMKEIAVKAANDTLTDEDRKLAHEEFKELKNSIDEISDKTEFNKIKLLKEDKDLNIQIKDNPYVTYTVKLQAV
NTERMDIKDSTVDTFQDASKAISSIDKALNELIKYRVNTGNDYNNLCQAFNDSSNSELNLTASLSRVEDSDMASSMMNLI
KGNVLSEYNKSMLVAVRETTQGINAIISKSLL

Specific function: Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella [H]

COG id: COG1344

COG function: function code N; Flagellin and related hook-associated proteins

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial flagellin family [H]

Homologues:

Organism=Escherichia coli, GI1788232, Length=155, Percent_Identity=36.1290322580645, Blast_Score=108, Evalue=4e-25,

Paralogues:

None

Copy number: 200,000-400,000 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001492
- InterPro:   IPR001029 [H]

Pfam domain/function: PF00700 Flagellin_C; PF00669 Flagellin_N [H]

EC number: NA

Molecular weight: Translated: 30304; Mature: 30304

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLINNANVLGSFNRITKQKFKNESVVEKVSSGKRINRASDDASGIAISESFKAQVRGLSQ
CEECCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHH
AGRNTQDGISMLQTVDAALDDISKHLYRMKEIAVKAANDTLTDEDRKLAHEEFKELKNSI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
DEISDKTEFNKIKLLKEDKDLNIQIKDNPYVTYTVKLQAVNTERMDIKDSTVDTFQDASK
HHHHCHHHHHHHEEEECCCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHH
AISSIDKALNELIKYRVNTGNDYNNLCQAFNDSSNSELNLTASLSRVEDSDMASSMMNLI
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEEHHHHCCHHHHHHHHHHHH
KGNVLSEYNKSMLVAVRETTQGINAIISKSLL
HHHHHHHHCHHHEEEEHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLINNANVLGSFNRITKQKFKNESVVEKVSSGKRINRASDDASGIAISESFKAQVRGLSQ
CEECCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHH
AGRNTQDGISMLQTVDAALDDISKHLYRMKEIAVKAANDTLTDEDRKLAHEEFKELKNSI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
DEISDKTEFNKIKLLKEDKDLNIQIKDNPYVTYTVKLQAVNTERMDIKDSTVDTFQDASK
HHHHCHHHHHHHEEEECCCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHH
AISSIDKALNELIKYRVNTGNDYNNLCQAFNDSSNSELNLTASLSRVEDSDMASSMMNLI
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEEHHHHCCHHHHHHHHHHHH
KGNVLSEYNKSMLVAVRETTQGINAIISKSLL
HHHHHHHHCHHHEEEEHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1479346; 11058132 [H]