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The map label for this gene is ntpC [H]

Identifier: 226950038

GI number: 226950038

Start: 2990817

End: 2991818

Strand: Reverse

Name: ntpC [H]

Synonym: CLM_2991

Alternate gene names: 226950038

Gene position: 2991818-2990817 (Counterclockwise)

Preceding gene: 226950039

Following gene: 226950037

Centisome position: 72.0

GC content: 26.55

Gene sequence:

>1002_bases
ATGGATAATTTAAATTATGCTCATGCCGTAGGTAGACTTAGAGTGCTTGAAACAAAGCTCTTAGATAGAACTAAAATAGA
GAGAATGATAGATAGTTCATCTCCAGAAGAAGTTATAAAAATATTAGAAGAAACAGAATATTCTAATTATATGGCTTCAG
TTAATAGACCTGAAGATTATGAAATTATCTTAAAGGAAGCTTTAAATGGTTTGTATAAGCTTATGTATGAAGTAACACCA
GAAAATTTAGTTGTAGATGTTATGAGTACAAGATATGATTATCATAATATAAAAGTTCTTATAAAAGAACATATATTAGA
GAAAGATTTAAGTAATATTTATATATCTTTAGATACTGTTAATATAAATTTATTGAAGGAGTATTTGTCCTCAAAGAAAT
CTAAGGCTGTAAACCCTATAATGGCAGAAGGAATTTCAAAAGCATTAGAGGCTTTTGATAAAGATAAAGATCCTCAAATG
ATAGATATAGTATTAGATAGCTATATGTATAAGGATATGTTTTATAAAGCTTCAAAGCTAGATGATAAATTTTTAAAAGA
ATATATAAAAATGCATATAGATTTTACTAATATAAAAACTCTATTAAGGGCTAAAAAGCAAGAGAAGGATAGAAGTTTTT
TAAATGAAGTAATTATAAAAGATGGAAATATTAATAAGGATGTGTATATGGATCTATTAAATGAACCAGAGGAAAATATC
CTTAAAAAATTACCAGGCAGCTTATATGAAAGAATACTTGCGGAAGGTATTGAAGATTATATCAATACAGGAAAACTTAA
TTACTTTGAAAAGCTTTCAGATAACTTCCTCATGGAATATGTAAAGAAAGCCAAATATATAACTTTTGGACTAGAACCTA
TTATAGGATTTATAATTGGAAAAGAAACTGAAATAAAGGTTTTAAGAATTATAATGATAGGTAAGCTAAATAGCGTAGCA
CCAGAAGTTATAAGAGAAAGGCTGCGTGATATATATGTTTAA

Upstream 100 bases:

>100_bases
TAGAAATAAATAACTCCTTTGAAGCTTTAGTAGATTCTTTAAGAGATGAACTGGAACAGGAAATTATAGAGGCTTTATTT
AGTTAGTAAGGAGGATAACT

Downstream 100 bases:

>100_bases
AATAGGAGTTGTTGGAGATAAAGATTCTATTCTAGCTTTTAAAGCTTTGGGTATAGATGTATATCCAGTAGTTGGATCAG
AAGAGGGAAAACGAACTATT

Product: V-type ATP synthase subunit C

Products: ADP; phosphate; H+

Alternate protein names: Na(+)-translocating ATPase subunit C; V-type sodium pump subunit C [H]

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MDNLNYAHAVGRLRVLETKLLDRTKIERMIDSSSPEEVIKILEETEYSNYMASVNRPEDYEIILKEALNGLYKLMYEVTP
ENLVVDVMSTRYDYHNIKVLIKEHILEKDLSNIYISLDTVNINLLKEYLSSKKSKAVNPIMAEGISKALEAFDKDKDPQM
IDIVLDSYMYKDMFYKASKLDDKFLKEYIKMHIDFTNIKTLLRAKKQEKDRSFLNEVIIKDGNINKDVYMDLLNEPEENI
LKKLPGSLYERILAEGIEDYINTGKLNYFEKLSDNFLMEYVKKAKYITFGLEPIIGFIIGKETEIKVLRIIMIGKLNSVA
PEVIRERLRDIYV

Sequences:

>Translated_333_residues
MDNLNYAHAVGRLRVLETKLLDRTKIERMIDSSSPEEVIKILEETEYSNYMASVNRPEDYEIILKEALNGLYKLMYEVTP
ENLVVDVMSTRYDYHNIKVLIKEHILEKDLSNIYISLDTVNINLLKEYLSSKKSKAVNPIMAEGISKALEAFDKDKDPQM
IDIVLDSYMYKDMFYKASKLDDKFLKEYIKMHIDFTNIKTLLRAKKQEKDRSFLNEVIIKDGNINKDVYMDLLNEPEENI
LKKLPGSLYERILAEGIEDYINTGKLNYFEKLSDNFLMEYVKKAKYITFGLEPIIGFIIGKETEIKVLRIIMIGKLNSVA
PEVIRERLRDIYV
>Mature_333_residues
MDNLNYAHAVGRLRVLETKLLDRTKIERMIDSSSPEEVIKILEETEYSNYMASVNRPEDYEIILKEALNGLYKLMYEVTP
ENLVVDVMSTRYDYHNIKVLIKEHILEKDLSNIYISLDTVNINLLKEYLSSKKSKAVNPIMAEGISKALEAFDKDKDPQM
IDIVLDSYMYKDMFYKASKLDDKFLKEYIKMHIDFTNIKTLLRAKKQEKDRSFLNEVIIKDGNINKDVYMDLLNEPEENI
LKKLPGSLYERILAEGIEDYINTGKLNYFEKLSDNFLMEYVKKAKYITFGLEPIIGFIIGKETEIKVLRIIMIGKLNSVA
PEVIRERLRDIYV

Specific function: Involved in ATP-driven sodium extrusion [H]

COG id: COG1527

COG function: function code C; Archaeal/vacuolar-type H+-ATPase subunit C

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the V-ATPase V0D/AC39 subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014272
- InterPro:   IPR002843 [H]

Pfam domain/function: PF01992 vATP-synt_AC39 [H]

EC number: 3.6.3.14

Molecular weight: Translated: 38948; Mature: 38948

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNLNYAHAVGRLRVLETKLLDRTKIERMIDSSSPEEVIKILEETEYSNYMASVNRPEDY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
EIILKEALNGLYKLMYEVTPENLVVDVMSTRYDYHNIKVLIKEHILEKDLSNIYISLDTV
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEEEC
NINLLKEYLSSKKSKAVNPIMAEGISKALEAFDKDKDPQMIDIVLDSYMYKDMFYKASKL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
DDKFLKEYIKMHIDFTNIKTLLRAKKQEKDRSFLNEVIIKDGNINKDVYMDLLNEPEENI
CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHH
LKKLPGSLYERILAEGIEDYINTGKLNYFEKLSDNFLMEYVKKAKYITFGLEPIIGFIIG
HHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
KETEIKVLRIIMIGKLNSVAPEVIRERLRDIYV
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDNLNYAHAVGRLRVLETKLLDRTKIERMIDSSSPEEVIKILEETEYSNYMASVNRPEDY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
EIILKEALNGLYKLMYEVTPENLVVDVMSTRYDYHNIKVLIKEHILEKDLSNIYISLDTV
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEEEC
NINLLKEYLSSKKSKAVNPIMAEGISKALEAFDKDKDPQMIDIVLDSYMYKDMFYKASKL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
DDKFLKEYIKMHIDFTNIKTLLRAKKQEKDRSFLNEVIIKDGNINKDVYMDLLNEPEENI
CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHH
LKKLPGSLYERILAEGIEDYINTGKLNYFEKLSDNFLMEYVKKAKYITFGLEPIIGFIIG
HHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
KETEIKVLRIIMIGKLNSVAPEVIRERLRDIYV
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8157629; 8144530 [H]