Click here to switch to the map view.

The map label for this gene is xerC [C]

Identifier: 226950013

GI number: 226950013

Start: 2966886

End: 2967818

Strand: Reverse

Name: xerC [C]

Synonym: CLM_2966

Alternate gene names: 226950013

Gene position: 2967818-2966886 (Counterclockwise)

Preceding gene: 226950014

Following gene: 226950012

Centisome position: 71.42

GC content: 26.26

Gene sequence:

>933_bases
TTGCGTTTAAAAAAAAGAAAATTAAAAGAAAAAACTTTTAAAGAATTGAAAGAAGAATATATTCTATATTTGCAGTTAAA
TAAAAGAAGTGTCTGGACTATTAAAACATATACAGAAAAATTTAATAGTTTCCTAAAATTTATTGGAAATGATTTTTTAT
GTGCAGATATTACAGAAAAGGTTATAGAAAATTATAAAAAGGAATTATTAAAAACAAATAGGGAAACAAGTGTAAATACA
CATTTAACTCATCTGAGAACTATTTTTAATTTTGCAAGTAAAAGAGGTTATATGCAAAATGTTAAAATAAATAAACTCGA
ATCACAAGAAAAAATTAAAAATGTTTATAGTAAAGAAGAGTTAGAAAGGTTATTGTTAGAAGAGCCACGAGAAACATTTA
TGCAGTATCAAGCTAGGGTAATTATAGCAACTTTTGTTTCAACAGGTTTAAGATTATCAGAATTAACATCTCTACAGATA
AGAGATGTAGATTTTCATAATTCTGTTATTTATAGCAGACATACAAAAACAAAAAAATCAAGAATATTACCTATATCTAC
AAGTTTAAGAAGTATGTTGGTCGAATGGATTAGCTATAGACAGGCAGAAAATGAAAAGGATGGTTTATTCTGTAACAGTT
ATGGGAAAACACTTAAACAGGCAACACTTAGAACACTTATGTATAGATATTTTGATCATAAAAATGTAAAAAGTGGCGGC
ATACATCAGTTTAGAAGAACATTTATAACTTATGCAGTGCAACAAGGGGTAGACATAATATCTTTAAGTAGAATCACAGG
TCATCAAAATTTAAAAATACTAAATAAATACTATGTTAACAGTACGGAAAGAGTTAAGAATTTAGCGGATACAGTTAGTC
CGCTAGAAAAATTAGATGTACTAGAGCATAAAAAGAAAAGAATAAAAAAATAA

Upstream 100 bases:

>100_bases
TGGACACTATGTAAGATATAAAAATGAAAGCATGATAATATACAAAAATAACCATGTAGTTTCCCTTTATGAAGGATTAA
GAAGGGAGGTTGCATGGTTT

Downstream 100 bases:

>100_bases
AGGTAGTTACCGCTACCTTTTAGATAAAACTTATAATGTTTTACAACTGAATATTATTAAATACTCAACTTTGATTTAAT
TCTATCAAAAAAAATAGGAA

Product: phage integrase family site-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MRLKKRKLKEKTFKELKEEYILYLQLNKRSVWTIKTYTEKFNSFLKFIGNDFLCADITEKVIENYKKELLKTNRETSVNT
HLTHLRTIFNFASKRGYMQNVKINKLESQEKIKNVYSKEELERLLLEEPRETFMQYQARVIIATFVSTGLRLSELTSLQI
RDVDFHNSVIYSRHTKTKKSRILPISTSLRSMLVEWISYRQAENEKDGLFCNSYGKTLKQATLRTLMYRYFDHKNVKSGG
IHQFRRTFITYAVQQGVDIISLSRITGHQNLKILNKYYVNSTERVKNLADTVSPLEKLDVLEHKKKRIKK

Sequences:

>Translated_310_residues
MRLKKRKLKEKTFKELKEEYILYLQLNKRSVWTIKTYTEKFNSFLKFIGNDFLCADITEKVIENYKKELLKTNRETSVNT
HLTHLRTIFNFASKRGYMQNVKINKLESQEKIKNVYSKEELERLLLEEPRETFMQYQARVIIATFVSTGLRLSELTSLQI
RDVDFHNSVIYSRHTKTKKSRILPISTSLRSMLVEWISYRQAENEKDGLFCNSYGKTLKQATLRTLMYRYFDHKNVKSGG
IHQFRRTFITYAVQQGVDIISLSRITGHQNLKILNKYYVNSTERVKNLADTVSPLEKLDVLEHKKKRIKK
>Mature_310_residues
MRLKKRKLKEKTFKELKEEYILYLQLNKRSVWTIKTYTEKFNSFLKFIGNDFLCADITEKVIENYKKELLKTNRETSVNT
HLTHLRTIFNFASKRGYMQNVKINKLESQEKIKNVYSKEELERLLLEEPRETFMQYQARVIIATFVSTGLRLSELTSLQI
RDVDFHNSVIYSRHTKTKKSRILPISTSLRSMLVEWISYRQAENEKDGLFCNSYGKTLKQATLRTLMYRYFDHKNVKSGG
IHQFRRTFITYAVQQGVDIISLSRITGHQNLKILNKYYVNSTERVKNLADTVSPLEKLDVLEHKKKRIKK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=299, Percent_Identity=22.0735785953177, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36843; Mature: 36843

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLKKRKLKEKTFKELKEEYILYLQLNKRSVWTIKTYTEKFNSFLKFIGNDFLCADITEK
CCCHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHH
VIENYKKELLKTNRETSVNTHLTHLRTIFNFASKRGYMQNVKINKLESQEKIKNVYSKEE
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHH
LERLLLEEPRETFMQYQARVIIATFVSTGLRLSELTSLQIRDVDFHNSVIYSRHTKTKKS
HHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEEECCCCCCCHHHHCCHHHHC
RILPISTSLRSMLVEWISYRQAENEKDGLFCNSYGKTLKQATLRTLMYRYFDHKNVKSGG
CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCC
IHQFRRTFITYAVQQGVDIISLSRITGHQNLKILNKYYVNSTERVKNLADTVSPLEKLDV
HHHHHHHHHHHHHHCCCCEEEEHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LEHKKKRIKK
HHHHHHHCCC
>Mature Secondary Structure
MRLKKRKLKEKTFKELKEEYILYLQLNKRSVWTIKTYTEKFNSFLKFIGNDFLCADITEK
CCCHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHH
VIENYKKELLKTNRETSVNTHLTHLRTIFNFASKRGYMQNVKINKLESQEKIKNVYSKEE
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHH
LERLLLEEPRETFMQYQARVIIATFVSTGLRLSELTSLQIRDVDFHNSVIYSRHTKTKKS
HHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEEECCCCCCCHHHHCCHHHHC
RILPISTSLRSMLVEWISYRQAENEKDGLFCNSYGKTLKQATLRTLMYRYFDHKNVKSGG
CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCC
IHQFRRTFITYAVQQGVDIISLSRITGHQNLKILNKYYVNSTERVKNLADTVSPLEKLDV
HHHHHHHHHHHHHHCCCCEEEEHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LEHKKKRIKK
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]