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The map label for this gene is 226949962

Identifier: 226949962

GI number: 226949962

Start: 2929330

End: 2930091

Strand: Reverse

Name: 226949962

Synonym: CLM_2915

Alternate gene names: NA

Gene position: 2930091-2929330 (Counterclockwise)

Preceding gene: 226949963

Following gene: 226949961

Centisome position: 70.51

GC content: 29.66

Gene sequence:

>762_bases
ATGAAAATAGGAATAGATTGTGGACATACAATGTCTGGAGCAGATTATGGAGCAGTAGGAATAAAAGCAGAAAGTAATCT
AACTAGAGAAGTAGGAACTAGAGTAATAAGTAAATTACAAGCTTTAGGACATACAGTAATTAAATGTTATAAAGATACTT
GTACCAACTTAAATGATAGTTTAAGTTATAGAACTAATATGGCTAATAGCAATAATGTAGACTTATATGTAAGCATACAC
TTTAATTGTTTTAATGGTAATGCATATGGTACTGAAGTATTTACATACGGAGGGAAAGAATTATTAGAAGCTAGAAAAGT
TTTAAATAATATCTGTTCATTAGGTTATACAAATAGAGGTATAAAAGATGGTAGTAATTTATATGTATTAAAACATACAA
AAGCTAAAGCCATGCTTATAGAATGTTGTTTTTGTGATAATAAAAACGATATGAATAGATTTAATGCCGAAAGTATGGCT
AATGCTATAGTTAAAGGTTTGGTAGGACAAACTACAAGTAATACATCAAGCAAGCCAACAGGTAACAGCAATAATGGATG
GATTAATTTAGATGGGAAAACAGGTACTATATGCACACCAAGCGGTGTAAATGTAAGAGAAAAGAAATCTACATCTTCTA
ACATATTAGAAACATTAGTTAACGGTACAACAGTTAGAGTATATCGTAAAGAGGGAGATTGGATACACATATATTATCCT
TCACATGGTGGATATATTTATGGGAAGTATGTAAAATATTAA

Upstream 100 bases:

>100_bases
TTTATACAATGGTTGTGGCATTTTATTTTAGTAAGGATAGAAAAGAGCAAGACAAATAGTTTTGTTCTTTTTTTATATTA
AATTTTAGGGAGGAATTTAT

Downstream 100 bases:

>100_bases
GTTATATTTTTTTGCATGATATTTTGTAAATTGTTTTGTTCTTAATATATCCAAAGTTTGATATTTTATTTACAAATATT
ACATTTTTGTTATAATTAAA

Product: bacteriophage endolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MKIGIDCGHTMSGADYGAVGIKAESNLTREVGTRVISKLQALGHTVIKCYKDTCTNLNDSLSYRTNMANSNNVDLYVSIH
FNCFNGNAYGTEVFTYGGKELLEARKVLNNICSLGYTNRGIKDGSNLYVLKHTKAKAMLIECCFCDNKNDMNRFNAESMA
NAIVKGLVGQTTSNTSSKPTGNSNNGWINLDGKTGTICTPSGVNVREKKSTSSNILETLVNGTTVRVYRKEGDWIHIYYP
SHGGYIYGKYVKY

Sequences:

>Translated_253_residues
MKIGIDCGHTMSGADYGAVGIKAESNLTREVGTRVISKLQALGHTVIKCYKDTCTNLNDSLSYRTNMANSNNVDLYVSIH
FNCFNGNAYGTEVFTYGGKELLEARKVLNNICSLGYTNRGIKDGSNLYVLKHTKAKAMLIECCFCDNKNDMNRFNAESMA
NAIVKGLVGQTTSNTSSKPTGNSNNGWINLDGKTGTICTPSGVNVREKKSTSSNILETLVNGTTVRVYRKEGDWIHIYYP
SHGGYIYGKYVKY
>Mature_253_residues
MKIGIDCGHTMSGADYGAVGIKAESNLTREVGTRVISKLQALGHTVIKCYKDTCTNLNDSLSYRTNMANSNNVDLYVSIH
FNCFNGNAYGTEVFTYGGKELLEARKVLNNICSLGYTNRGIKDGSNLYVLKHTKAKAMLIECCFCDNKNDMNRFNAESMA
NAIVKGLVGQTTSNTSSKPTGNSNNGWINLDGKTGTICTPSGVNVREKKSTSSNILETLVNGTTVRVYRKEGDWIHIYYP
SHGGYIYGKYVKY

Specific function: Unknown

COG id: COG0860

COG function: function code M; N-acetylmuramoyl-L-alanine amidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To C.perfringens pIP404 ORF10 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002508 [H]

Pfam domain/function: PF01520 Amidase_3 [H]

EC number: 3.5.1.28

Molecular weight: Translated: 27787; Mature: 27787

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIGIDCGHTMSGADYGAVGIKAESNLTREVGTRVISKLQALGHTVIKCYKDTCTNLNDS
CEEECCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LSYRTNMANSNNVDLYVSIHFNCFNGNAYGTEVFTYGGKELLEARKVLNNICSLGYTNRG
CEEEECCCCCCCEEEEEEEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCC
IKDGSNLYVLKHTKAKAMLIECCFCDNKNDMNRFNAESMANAIVKGLVGQTTSNTSSKPT
CCCCCCEEEEEECCCCEEEEEEEECCCCCCCHHCCHHHHHHHHHHHHHCCCCCCCCCCCC
GNSNNGWINLDGKTGTICTPSGVNVREKKSTSSNILETLVNGTTVRVYRKEGDWIHIYYP
CCCCCCEEEECCCCCCEECCCCCCCHHCCCCHHHHHHHHHCCCEEEEEECCCCEEEEEEC
SHGGYIYGKYVKY
CCCCEEEEEEECC
>Mature Secondary Structure
MKIGIDCGHTMSGADYGAVGIKAESNLTREVGTRVISKLQALGHTVIKCYKDTCTNLNDS
CEEECCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LSYRTNMANSNNVDLYVSIHFNCFNGNAYGTEVFTYGGKELLEARKVLNNICSLGYTNRG
CEEEECCCCCCCEEEEEEEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCC
IKDGSNLYVLKHTKAKAMLIECCFCDNKNDMNRFNAESMANAIVKGLVGQTTSNTSSKPT
CCCCCCEEEEEECCCCEEEEEEEECCCCCCCHHCCHHHHHHHHHHHHHCCCCCCCCCCCC
GNSNNGWINLDGKTGTICTPSGVNVREKKSTSSNILETLVNGTTVRVYRKEGDWIHIYYP
CCCCCCEEEECCCCCCEECCCCCCCHHCCCCHHHHHHHHHCCCEEEEEECCCCEEEEEEC
SHGGYIYGKYVKY
CCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8052128; 11792842 [H]