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The map label for this gene is ocd2 [H]

Identifier: 226949930

GI number: 226949930

Start: 2887342

End: 2888331

Strand: Reverse

Name: ocd2 [H]

Synonym: CLM_2882

Alternate gene names: 226949930

Gene position: 2888331-2887342 (Counterclockwise)

Preceding gene: 226949931

Following gene: 226949928

Centisome position: 69.51

GC content: 31.31

Gene sequence:

>990_bases
ATGCTTATTTTAACAGCAGAAGATATTAAAAAAGTGTTTACTATGAGAGATGCTATAGAAGCAGATAAAGAAGCTTTTAG
GCTTTATTCAACTAATAAAGCTGAAGTTCCATTAAGAACAAATATAAATATACCTAAATATAATGGGACAAGTCTTTTTA
TGCCAGGTTATGTTGAAGAATTAGATACAGCAGGAATCAAGATAGTATCTGTATTTCCCGAAAATGTGAAACTAGGAAAA
CCAGCAGTACCAGCTAAAATGATACTGTTAGATGGAAAAACAGGAGAAGTTTCAGCTATAATGGATGGAACTTATTTAAC
TCAACTTAGAACAGGTGCCTCTGCCGGAGCAGCTACAGATATTTTAGCAAAAGAAGATGCTAAAATAGGAGCTTTAATAG
GTACGGGTGGTCAAGCTTTATGTCAGTTGGAAGCCTTATTAGCAGCTAGAAATTTAGAAATAGTAAAGGTTTATAGTAGA
AACTTTGAAAAGGTAAAAGCTTTTGTAGAAGAAGCTAAGAAAAATTTAAGTAAGTATGGTACAGAAATAATAGGGGTAAA
CAGTTCAGATGAAGCTATTGAAAATGCAGATGTTATAACAGTAGTAACTACAGCTACTTCACCAGTTTTTGACGGTAGAA
AGATAAAAAAAGGAGCTCATATAAATGGCGTAGGATCTTATATGAAACATATGCAAGAAATTGATGAATATATTATATCT
AGGGCAGATAAAATATATTTAGATTCAAAAGAAGCTGTTTTAAGTGAAGCTGGAGATTTTATAATACCCCTACAAAAAGG
AATTATAAAAGAAGATAAAATTACAGGAGAATTAGGACAAGTTATTTCAAAGGCTATAGATGGAAGAACAACCGAAAACG
AAATAACTCTATTTAAATCTGTAGGTATTGCAGTACAGGATGTTGTAACTGCATATAAAATATATGAAAAAGCCCTAGAA
AATAAAGTAGGTAAAGAAATAGAAATATAA

Upstream 100 bases:

>100_bases
TAATATGATATAGTAAAAAATCAATATTCCTATTTAATAATACTCCATAATGTAATATTATATATATAAGAGTTTAATAT
TATATTATGGAGGTATTTTT

Downstream 100 bases:

>100_bases
GCAGCGAACCCAAATCTACGATTTGGCGTGAGTCGCTTACTCCTATGTAAATAGGAGTTTCGTATAAATAGAACCCAAAT
CTACGATTTGGTGTGAGTCG

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MLILTAEDIKKVFTMRDAIEADKEAFRLYSTNKAEVPLRTNINIPKYNGTSLFMPGYVEELDTAGIKIVSVFPENVKLGK
PAVPAKMILLDGKTGEVSAIMDGTYLTQLRTGASAGAATDILAKEDAKIGALIGTGGQALCQLEALLAARNLEIVKVYSR
NFEKVKAFVEEAKKNLSKYGTEIIGVNSSDEAIENADVITVVTTATSPVFDGRKIKKGAHINGVGSYMKHMQEIDEYIIS
RADKIYLDSKEAVLSEAGDFIIPLQKGIIKEDKITGELGQVISKAIDGRTTENEITLFKSVGIAVQDVVTAYKIYEKALE
NKVGKEIEI

Sequences:

>Translated_329_residues
MLILTAEDIKKVFTMRDAIEADKEAFRLYSTNKAEVPLRTNINIPKYNGTSLFMPGYVEELDTAGIKIVSVFPENVKLGK
PAVPAKMILLDGKTGEVSAIMDGTYLTQLRTGASAGAATDILAKEDAKIGALIGTGGQALCQLEALLAARNLEIVKVYSR
NFEKVKAFVEEAKKNLSKYGTEIIGVNSSDEAIENADVITVVTTATSPVFDGRKIKKGAHINGVGSYMKHMQEIDEYIIS
RADKIYLDSKEAVLSEAGDFIIPLQKGIIKEDKITGELGQVISKAIDGRTTENEITLFKSVGIAVQDVVTAYKIYEKALE
NKVGKEIEI
>Mature_329_residues
MLILTAEDIKKVFTMRDAIEADKEAFRLYSTNKAEVPLRTNINIPKYNGTSLFMPGYVEELDTAGIKIVSVFPENVKLGK
PAVPAKMILLDGKTGEVSAIMDGTYLTQLRTGASAGAATDILAKEDAKIGALIGTGGQALCQLEALLAARNLEIVKVYSR
NFEKVKAFVEEAKKNLSKYGTEIIGVNSSDEAIENADVITVVTTATSPVFDGRKIKKGAHINGVGSYMKHMQEIDEYIIS
RADKIYLDSKEAVLSEAGDFIIPLQKGIIKEDKITGELGQVISKAIDGRTTENEITLFKSVGIAVQDVVTAYKIYEKALE
NKVGKEIEI

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI62241008, Length=287, Percent_Identity=31.3588850174216, Blast_Score=132, Evalue=6e-31,
Organism=Homo sapiens, GI4503065, Length=287, Percent_Identity=31.3588850174216, Blast_Score=132, Evalue=6e-31,
Organism=Drosophila melanogaster, GI24642678, Length=316, Percent_Identity=29.746835443038, Blast_Score=107, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 35757; Mature: 35757

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILTAEDIKKVFTMRDAIEADKEAFRLYSTNKAEVPLRTNINIPKYNGTSLFMPGYVEE
CEEEEHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEECCCCCCCCCCEEECCCHHHH
LDTAGIKIVSVFPENVKLGKPAVPAKMILLDGKTGEVSAIMDGTYLTQLRTGASAGAATD
HCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEECCHHHHHHHCCCCCCCHHH
ILAKEDAKIGALIGTGGQALCQLEALLAARNLEIVKVYSRNFEKVKAFVEEAKKNLSKYG
HHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEHHCCHHHHHHHHHHHHHHHHHCC
TEIIGVNSSDEAIENADVITVVTTATSPVFDGRKIKKGAHINGVGSYMKHMQEIDEYIIS
CEEEECCCCCHHHCCCCEEEEEEECCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHC
RADKIYLDSKEAVLSEAGDFIIPLQKGIIKEDKITGELGQVISKAIDGRTTENEITLFKS
CCCEEEECCHHHHHHCCCCEEEEHHHCCCCHHHCCHHHHHHHHHHHCCCCCCCCEEEEHH
VGIAVQDVVTAYKIYEKALENKVGKEIEI
CCHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLILTAEDIKKVFTMRDAIEADKEAFRLYSTNKAEVPLRTNINIPKYNGTSLFMPGYVEE
CEEEEHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEECCCCCCCCCCEEECCCHHHH
LDTAGIKIVSVFPENVKLGKPAVPAKMILLDGKTGEVSAIMDGTYLTQLRTGASAGAATD
HCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEECCHHHHHHHCCCCCCCHHH
ILAKEDAKIGALIGTGGQALCQLEALLAARNLEIVKVYSRNFEKVKAFVEEAKKNLSKYG
HHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEHHCCHHHHHHHHHHHHHHHHHCC
TEIIGVNSSDEAIENADVITVVTTATSPVFDGRKIKKGAHINGVGSYMKHMQEIDEYIIS
CEEEECCCCCHHHCCCCEEEEEEECCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHC
RADKIYLDSKEAVLSEAGDFIIPLQKGIIKEDKITGELGQVISKAIDGRTTENEITLFKS
CCCEEEECCHHHHHHCCCCEEEEHHHCCCCHHHCCHHHHHHHHHHHCCCCCCCCEEEEHH
VGIAVQDVVTAYKIYEKALENKVGKEIEI
CCHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]