Click here to switch to the map view.

The map label for this gene is recT [H]

Identifier: 226949906

GI number: 226949906

Start: 2861134

End: 2861937

Strand: Reverse

Name: recT [H]

Synonym: CLM_2857

Alternate gene names: 226949906

Gene position: 2861937-2861134 (Counterclockwise)

Preceding gene: 226949908

Following gene: 226949905

Centisome position: 68.87

GC content: 31.09

Gene sequence:

>804_bases
ATGGCAAATACAAAAGCAATTGTACTACAAGAAACAGCCAATAATTTAAATACTTTATTAAAGGCTAAAGTAAAAGCTTT
ACCAAAAGGATTTAATGAAACTAGATTTTTACAAAATTGCATGACAGTATTACAAGATACAAGGAATATAGAAAAATGTA
ATTCTGTAAGTGTAGCAAGGACAATGCTTAAAGGAGCTTTTCTAGGTTTAGACTTTTTTAGTAAAGAATGTTATGCGATA
CCATACAATGATTATAAAACTGGAAAATGTCATTTGGAATTTCAAACTGATTATAAAGGTGAAAGAAAACTAATGAAGCA
ATATTCAGTTAGACCAATAAAGGATATATATGCAAAGGTAGTTAGAGAAGGTGATGAGTTCGAAGAAATTATAGAGAAGG
GAATTCCAACAATAAATTTTAGACCTAAACCTTTTAGTAATGAAAAAATAATAGGAGTATTTGCAGTAGTTCTATTTGAA
GATGGTGGGCTATTATATGAAACTATGTCAGCAGAGGACGTTGAAAAGATAAAAGTAGGTTTTGCTAAAAGAGATAAAGA
AGGGAATTATTCAAAAGCATGGACCGCAACACCAGAGGAAATGTATAAGAAAACAGTTATTAGGAGATTGAGAAAATCAG
TAGAATTGGAGTTTGATAGCGTAGAACAACAGAAAACATATGAAGAGGCATCAGAGTTTGATGTTAAAAGTGATGAAGAA
GTAAAAGAAGAGGCATCACCATTTGAAAATGTAGACTTTGAAGAAGTGGAAGAGGGGAGCACAATTGAAGCTAAACAAGA
ATAA

Upstream 100 bases:

>100_bases
TGTATACACTAAAGATTACAGCAAGTTATATATAATACAAAAACAGTATTACTAGAAAAAGCTTGGTTAAATTAAAAGTG
TATTAAGGAGGAAATAAAAA

Downstream 100 bases:

>100_bases
CTATTTTGATATAGAAGTCCAAAAAGAATATATGTCAGTTAGTTTATTTAAATCTTTTTTAGAAGAATATAACGGATGTG
AAGCTAGGACGATGGCAGTG

Product: recombinase, phage RecT family

Products: NA

Alternate protein names: P33 [H]

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MANTKAIVLQETANNLNTLLKAKVKALPKGFNETRFLQNCMTVLQDTRNIEKCNSVSVARTMLKGAFLGLDFFSKECYAI
PYNDYKTGKCHLEFQTDYKGERKLMKQYSVRPIKDIYAKVVREGDEFEEIIEKGIPTINFRPKPFSNEKIIGVFAVVLFE
DGGLLYETMSAEDVEKIKVGFAKRDKEGNYSKAWTATPEEMYKKTVIRRLRKSVELEFDSVEQQKTYEEASEFDVKSDEE
VKEEASPFENVDFEEVEEGSTIEAKQE

Sequences:

>Translated_267_residues
MANTKAIVLQETANNLNTLLKAKVKALPKGFNETRFLQNCMTVLQDTRNIEKCNSVSVARTMLKGAFLGLDFFSKECYAI
PYNDYKTGKCHLEFQTDYKGERKLMKQYSVRPIKDIYAKVVREGDEFEEIIEKGIPTINFRPKPFSNEKIIGVFAVVLFE
DGGLLYETMSAEDVEKIKVGFAKRDKEGNYSKAWTATPEEMYKKTVIRRLRKSVELEFDSVEQQKTYEEASEFDVKSDEE
VKEEASPFENVDFEEVEEGSTIEAKQE
>Mature_266_residues
ANTKAIVLQETANNLNTLLKAKVKALPKGFNETRFLQNCMTVLQDTRNIEKCNSVSVARTMLKGAFLGLDFFSKECYAIP
YNDYKTGKCHLEFQTDYKGERKLMKQYSVRPIKDIYAKVVREGDEFEEIIEKGIPTINFRPKPFSNEKIIGVFAVVLFED
GGLLYETMSAEDVEKIKVGFAKRDKEGNYSKAWTATPEEMYKKTVIRRLRKSVELEFDSVEQQKTYEEASEFDVKSDEEV
KEEASPFENVDFEEVEEGSTIEAKQE

Specific function: Binds to single-stranded DNA and also promotes the renaturation of complementary single-stranded DNA. Function in recombination. Has a function similar to that of lambda redB [H]

COG id: COG3723

COG function: function code L; Recombinational DNA repair protein (RecE pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787611, Length=206, Percent_Identity=28.6407766990291, Blast_Score=78, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004590
- InterPro:   IPR018330 [H]

Pfam domain/function: PF03837 RecT [H]

EC number: NA

Molecular weight: Translated: 30711; Mature: 30580

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS00327 BACTERIAL_OPSIN_RET

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANTKAIVLQETANNLNTLLKAKVKALPKGFNETRFLQNCMTVLQDTRNIEKCNSVSVAR
CCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMLKGAFLGLDFFSKECYAIPYNDYKTGKCHLEFQTDYKGERKLMKQYSVRPIKDIYAKV
HHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHH
VREGDEFEEIIEKGIPTINFRPKPFSNEKIIGVFAVVLFEDGGLLYETMSAEDVEKIKVG
HHCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHEEEHCCCCCEEEEECCHHHHHHHHHH
FAKRDKEGNYSKAWTATPEEMYKKTVIRRLRKSVELEFDSVEQQKTYEEASEFDVKSDEE
HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHH
VKEEASPFENVDFEEVEEGSTIEAKQE
HHHHCCCCCCCCHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ANTKAIVLQETANNLNTLLKAKVKALPKGFNETRFLQNCMTVLQDTRNIEKCNSVSVAR
CCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMLKGAFLGLDFFSKECYAIPYNDYKTGKCHLEFQTDYKGERKLMKQYSVRPIKDIYAKV
HHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHH
VREGDEFEEIIEKGIPTINFRPKPFSNEKIIGVFAVVLFEDGGLLYETMSAEDVEKIKVG
HHCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHEEEHCCCCCEEEEECCHHHHHHHHHH
FAKRDKEGNYSKAWTATPEEMYKKTVIRRLRKSVELEFDSVEQQKTYEEASEFDVKSDEE
HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHH
VKEEASPFENVDFEEVEEGSTIEAKQE
HHHHCCCCCCCCHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8244937; 9097039; 9278503; 8416902 [H]