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The map label for this gene is rpe [H]

Identifier: 226949855

GI number: 226949855

Start: 2811627

End: 2812277

Strand: Reverse

Name: rpe [H]

Synonym: CLM_2802

Alternate gene names: 226949855

Gene position: 2812277-2811627 (Counterclockwise)

Preceding gene: 226949856

Following gene: 226949854

Centisome position: 67.68

GC content: 30.72

Gene sequence:

>651_bases
ATGGTAAAAATAGCGCCATCAATACTTTCAGCAGACTTTTCTAAACTAGGGGAGGACATAAAAAATCTAGATAAATATGG
GGCAGATGTTATACATATAGATGTAATGGATGGTAGATTTGTTCCTAATATTTCTTTTGGAATTCCAATAATTAAAAGTA
TAAGAAATCTAACAGACAAACCTTTTGATGTGCATCTTATGATAGAAGAACCTTCTAAATACATAGAAGATTTTGTAAAG
GCAGGAGCAGATATAATATCAGTCCATTATGAAGCAGATAAACATATAGACAGAACAATAAATTATATAAAAAGTCTTGG
AATAAAGGCAGCTGTGGCTTTAAATCCAGGTACATCTATAAGCTGTATTAAGGATTTAATACCTTCTTTGGATATGGTGC
TTATTATGTCTGTAAATCCAGGTTTTGGGGGACAAAAATATATTCAATATGCTTCAGAAAAAATAAAGGAAGTTAAGGTT
TTAAGTGAAAAATATAATAAAGATTTAATAATAGAAGTAGATGGAGGGGTTACTAAAGACAATATAAAGGAAATAGCAGA
TTGTGGTGCCGATCTTCTAGTAGCAGGCTCAGCAGTATTTAAAAATGGAGAAATAGAAAAAAATATAAAGGTGCTAAGAG
AGGCATTATAA

Upstream 100 bases:

>100_bases
GTGCAGTAAAAAAAGCAGTAGAGGAAGGCCATATACACAAAAATAGATATGATTTTTATATAAAAACTTTAGAAGAATTT
ATGAATAGGAGGAAGAAAAA

Downstream 100 bases:

>100_bases
AATGAAAGCCATAGTAATAGGAGGAGGAGAAGCACCTTCCAAAGAGCTTTTGAAGCAAGAAATGAAGGATTCTTCTTATA
TAATATGTGCGGATAGTGGT

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MVKIAPSILSADFSKLGEDIKNLDKYGADVIHIDVMDGRFVPNISFGIPIIKSIRNLTDKPFDVHLMIEEPSKYIEDFVK
AGADIISVHYEADKHIDRTINYIKSLGIKAAVALNPGTSISCIKDLIPSLDMVLIMSVNPGFGGQKYIQYASEKIKEVKV
LSEKYNKDLIIEVDGGVTKDNIKEIADCGADLLVAGSAVFKNGEIEKNIKVLREAL

Sequences:

>Translated_216_residues
MVKIAPSILSADFSKLGEDIKNLDKYGADVIHIDVMDGRFVPNISFGIPIIKSIRNLTDKPFDVHLMIEEPSKYIEDFVK
AGADIISVHYEADKHIDRTINYIKSLGIKAAVALNPGTSISCIKDLIPSLDMVLIMSVNPGFGGQKYIQYASEKIKEVKV
LSEKYNKDLIIEVDGGVTKDNIKEIADCGADLLVAGSAVFKNGEIEKNIKVLREAL
>Mature_216_residues
MVKIAPSILSADFSKLGEDIKNLDKYGADVIHIDVMDGRFVPNISFGIPIIKSIRNLTDKPFDVHLMIEEPSKYIEDFVK
AGADIISVHYEADKHIDRTINYIKSLGIKAAVALNPGTSISCIKDLIPSLDMVLIMSVNPGFGGQKYIQYASEKIKEVKV
LSEKYNKDLIIEVDGGVTKDNIKEIADCGADLLVAGSAVFKNGEIEKNIKVLREAL

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=214, Percent_Identity=38.785046728972, Blast_Score=165, Evalue=2e-41,
Organism=Homo sapiens, GI219879828, Length=214, Percent_Identity=37.3831775700935, Blast_Score=155, Evalue=3e-38,
Organism=Homo sapiens, GI24307923, Length=168, Percent_Identity=30.3571428571429, Blast_Score=94, Evalue=1e-19,
Organism=Escherichia coli, GI1789788, Length=214, Percent_Identity=47.6635514018692, Blast_Score=201, Evalue=2e-53,
Organism=Escherichia coli, GI1790523, Length=205, Percent_Identity=35.609756097561, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1790754, Length=206, Percent_Identity=27.1844660194175, Blast_Score=100, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI17552948, Length=218, Percent_Identity=41.2844036697248, Blast_Score=173, Evalue=6e-44,
Organism=Saccharomyces cerevisiae, GI6322341, Length=229, Percent_Identity=43.6681222707424, Blast_Score=191, Evalue=9e-50,
Organism=Drosophila melanogaster, GI24586301, Length=215, Percent_Identity=39.0697674418605, Blast_Score=163, Evalue=7e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23737; Mature: 23737

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKIAPSILSADFSKLGEDIKNLDKYGADVIHIDVMDGRFVPNISFGIPIIKSIRNLTDK
CCEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCEECCCCCCCCHHHHHHHHCCCC
PFDVHLMIEEPSKYIEDFVKAGADIISVHYEADKHIDRTINYIKSLGIKAAVALNPGTSI
CCEEEEEEECCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCH
SCIKDLIPSLDMVLIMSVNPGFGGQKYIQYASEKIKEVKVLSEKYNKDLIIEVDGGVTKD
HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH
NIKEIADCGADLLVAGSAVFKNGEIEKNIKVLREAL
HHHHHHHCCCHHEEECHHHHCCCCHHHHHHHHHHHC
>Mature Secondary Structure
MVKIAPSILSADFSKLGEDIKNLDKYGADVIHIDVMDGRFVPNISFGIPIIKSIRNLTDK
CCEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCEECCCCCCCCHHHHHHHHCCCC
PFDVHLMIEEPSKYIEDFVKAGADIISVHYEADKHIDRTINYIKSLGIKAAVALNPGTSI
CCEEEEEEECCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCH
SCIKDLIPSLDMVLIMSVNPGFGGQKYIQYASEKIKEVKVLSEKYNKDLIIEVDGGVTKD
HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH
NIKEIADCGADLLVAGSAVFKNGEIEKNIKVLREAL
HHHHHHHCCCHHEEECHHHHCCCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]