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The map label for this gene is abrB [H]

Identifier: 226949621

GI number: 226949621

Start: 2601592

End: 2601831

Strand: Reverse

Name: abrB [H]

Synonym: CLM_2558

Alternate gene names: 226949621

Gene position: 2601831-2601592 (Counterclockwise)

Preceding gene: 226949622

Following gene: 226949620

Centisome position: 62.62

GC content: 31.67

Gene sequence:

>240_bases
ATGAAATCAACTGGAGTTGTAAGAAAACTAGACAATTTAGGAAGAGTGGTTTTACCAAAGGAACTAAGAAAGACTTTAAA
CTTGGATGAAAAGGATCCTCTAGAAATATACGTAGATGGAGAGCAAATCATATTAAAGAAGTATGCTCCAGCATGCATAT
TTTGTGGAGAGGCAAATGAGGTTATAAATTTTAAAGGTAAAAATATTTGTAAAATCTGTTTAAAGGAGTTAGGCAAATAG

Upstream 100 bases:

>100_bases
GGCTATATAACGAACATGGAAATTTAGACAAGGCTCTAAGAGCTGTAGGAAAAGAAATAATACTATATGAATTAAATAAA
AATAAGGGAGAGATGTAATT

Downstream 100 bases:

>100_bases
TGAGTATTGAAGATTATGTAAATTTAAAAATTAAAGAAATGGTAAATGATGCACATAGAAATGCAATAGATCATGGGTTT
TGGGAAGAAGAACAGAATAT

Product: AbrB family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 79

Protein sequence:

>79_residues
MKSTGVVRKLDNLGRVVLPKELRKTLNLDEKDPLEIYVDGEQIILKKYAPACIFCGEANEVINFKGKNICKICLKELGK

Sequences:

>Translated_79_residues
MKSTGVVRKLDNLGRVVLPKELRKTLNLDEKDPLEIYVDGEQIILKKYAPACIFCGEANEVINFKGKNICKICLKELGK
>Mature_79_residues
MKSTGVVRKLDNLGRVVLPKELRKTLNLDEKDPLEIYVDGEQIILKKYAPACIFCGEANEVINFKGKNICKICLKELGK

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 8907; Mature: 8907

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
5.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTGVVRKLDNLGRVVLPKELRKTLNLDEKDPLEIYVDGEQIILKKYAPACIFCGEANE
CCCCHHHHHHHHCCCEECCHHHHHHCCCCCCCCEEEEECCCEEEEECCCCEEEEECCCCC
VINFKGKNICKICLKELGK
EEECCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKSTGVVRKLDNLGRVVLPKELRKTLNLDEKDPLEIYVDGEQIILKKYAPACIFCGEANE
CCCCHHHHHHHHCCCEECCHHHHHHCCCCCCCCEEEEECCCEEEEECCCCEEEEECCCCC
VINFKGKNICKICLKELGK
EEECCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]