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The map label for this gene is yqbK [H]

Identifier: 226949579

GI number: 226949579

Start: 2578482

End: 2579888

Strand: Reverse

Name: yqbK [H]

Synonym: CLM_2516

Alternate gene names: 226949579

Gene position: 2579888-2578482 (Counterclockwise)

Preceding gene: 226949580

Following gene: 226949578

Centisome position: 62.09

GC content: 32.76

Gene sequence:

>1407_bases
ATGGCCACAGGAGTATGGAATGAAAATAATAGACCTACTATACCGGGTTTTTACAACCGATTTAAAGCATTAGCAGAAAA
AAGAATAGGAACTGGAATACATGGCATTTTGGCCATGCCAGTTAAAGCTAATTGGGGACCTATAGAAAAAGTAGTAAGTA
TAAAAGATGAAAAAGACTTAATAAATAAGTTTGGTAAGGACAATACAGCGTATAGATTAGGCAGATTATCGCTATTAGGA
CAACCTAAAGAGCTGTTACTATATAGGCTTACAGATGGTGCAGAAAAGATATCAAGCGTAATGCTTAAGGATACAGAAGA
TACAGATATTCTAAAAATAGAAACCTTATATCCTACAACTAGAGATTTTAATATAACAATTAGAACAAATATAGTAGATG
ATACTAAGAAAGATTTAATTTTATATGAAGCAACTAAACAGCTATATGCATTCTCTGAACTTGGTGGAACTATAGAAGAA
GTAGCTAAATCTATTAATGAAAATGTGGAAAATACATGGCTTAAGGCTACTAAATTAGATGAAGGCAATGGAAAACTCGG
TAATGTTGCAAATCAAACCATTACAGGAGGTAATGATGGTACAACATCTATAACTAATGAGCATTATATTAAAGCTATGG
AGATACTTGAAGGCTATAAAGCTGATGGGTTTTGTTTAGATGGTGTAACTGATGAATCATTACAAAACACTGTAAAAGCA
TGGGTTAAAAGAAATAAGACTAAAGGCAACAATATAATTGCTTACTTAGGAATTAAGGACACAGATACTATTCAACAAGC
TAACACAAAGAGTAAAGAATTTAACTTTGAGGGGATAGTTAATGTAGGTATTAGTGGTTACTATGAAGGTGTAAAGTATA
CACCCACTGAAACGGCATGCTATATAGCTGGATTAGCAACAGGTAAAAGGTTAAAAGAGAGTATCTGCAATGAAAAGACT
ATATTTGAAGATGTAGAACCTCGTTTAAGTAAGGAAGAAGTGGAGAACTGTTTAGAAGCAGGAACTCTAATTCTAGTAAA
AGAAGATGATGAGATTATAGTTGTAGATGATGTAAATACACTAAAAAAATATAGTGAAGAACAAAATGAAACTTGGGGAT
ATATCAGAGGTATAAAGTTCATGAATGCAGTTGATGGAGATACTGCACTAAAAAGGAAAGAGTTTATAGGTAAAGTACCT
AATGAGGGGACAGGTCGATTAGCATTAATATGTGCTCTTAAACAATACTTTGAGGTTTTAGAAAAAGAAGGTGTAATAGA
AGACTTTACAGTCGAGATAGATGAGGAATTACAAGCTAAGGCGAAAAATGATGAAGTATTCTGGAAATGGGATGCTAAGT
ATGTAAATGTAATGAAACGTATCTATGGAACAGGATATTTGAGATAG

Upstream 100 bases:

>100_bases
AGGTAGCAGTTGGTGCTTTATTTGATTGTGGTAAAGAAGAAATGACTAAAAAAGAATTTGAAGGAAGAATTAAAAAGTTC
TTAGGAAAGAAGGTGGAATA

Downstream 100 bases:

>100_bases
GAGTGATAATTTATGGCATTGGATGCTTCAAGAACCATACACGGGTCTAAAGGGAAAATACTTATAGATGGTATATGGCA
AACAAATCTTACAGAAACAA

Product: putative tail sheath protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MATGVWNENNRPTIPGFYNRFKALAEKRIGTGIHGILAMPVKANWGPIEKVVSIKDEKDLINKFGKDNTAYRLGRLSLLG
QPKELLLYRLTDGAEKISSVMLKDTEDTDILKIETLYPTTRDFNITIRTNIVDDTKKDLILYEATKQLYAFSELGGTIEE
VAKSINENVENTWLKATKLDEGNGKLGNVANQTITGGNDGTTSITNEHYIKAMEILEGYKADGFCLDGVTDESLQNTVKA
WVKRNKTKGNNIIAYLGIKDTDTIQQANTKSKEFNFEGIVNVGISGYYEGVKYTPTETACYIAGLATGKRLKESICNEKT
IFEDVEPRLSKEEVENCLEAGTLILVKEDDEIIVVDDVNTLKKYSEEQNETWGYIRGIKFMNAVDGDTALKRKEFIGKVP
NEGTGRLALICALKQYFEVLEKEGVIEDFTVEIDEELQAKAKNDEVFWKWDAKYVNVMKRIYGTGYLR

Sequences:

>Translated_468_residues
MATGVWNENNRPTIPGFYNRFKALAEKRIGTGIHGILAMPVKANWGPIEKVVSIKDEKDLINKFGKDNTAYRLGRLSLLG
QPKELLLYRLTDGAEKISSVMLKDTEDTDILKIETLYPTTRDFNITIRTNIVDDTKKDLILYEATKQLYAFSELGGTIEE
VAKSINENVENTWLKATKLDEGNGKLGNVANQTITGGNDGTTSITNEHYIKAMEILEGYKADGFCLDGVTDESLQNTVKA
WVKRNKTKGNNIIAYLGIKDTDTIQQANTKSKEFNFEGIVNVGISGYYEGVKYTPTETACYIAGLATGKRLKESICNEKT
IFEDVEPRLSKEEVENCLEAGTLILVKEDDEIIVVDDVNTLKKYSEEQNETWGYIRGIKFMNAVDGDTALKRKEFIGKVP
NEGTGRLALICALKQYFEVLEKEGVIEDFTVEIDEELQAKAKNDEVFWKWDAKYVNVMKRIYGTGYLR
>Mature_467_residues
ATGVWNENNRPTIPGFYNRFKALAEKRIGTGIHGILAMPVKANWGPIEKVVSIKDEKDLINKFGKDNTAYRLGRLSLLGQ
PKELLLYRLTDGAEKISSVMLKDTEDTDILKIETLYPTTRDFNITIRTNIVDDTKKDLILYEATKQLYAFSELGGTIEEV
AKSINENVENTWLKATKLDEGNGKLGNVANQTITGGNDGTTSITNEHYIKAMEILEGYKADGFCLDGVTDESLQNTVKAW
VKRNKTKGNNIIAYLGIKDTDTIQQANTKSKEFNFEGIVNVGISGYYEGVKYTPTETACYIAGLATGKRLKESICNEKTI
FEDVEPRLSKEEVENCLEAGTLILVKEDDEIIVVDDVNTLKKYSEEQNETWGYIRGIKFMNAVDGDTALKRKEFIGKVPN
EGTGRLALICALKQYFEVLEKEGVIEDFTVEIDEELQAKAKNDEVFWKWDAKYVNVMKRIYGTGYLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis xkdK [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020287
- InterPro:   IPR007067
- ProDom:   PD032508 [H]

Pfam domain/function: PF04984 Phage_sheath_1 [H]

EC number: NA

Molecular weight: Translated: 52631; Mature: 52500

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGVWNENNRPTIPGFYNRFKALAEKRIGTGIHGILAMPVKANWGPIEKVVSIKDEKDL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECEECCCCHHHHHHHCCCHHHH
INKFGKDNTAYRLGRLSLLGQPKELLLYRLTDGAEKISSVMLKDTEDTDILKIETLYPTT
HHHHCCCCCCEEEEHHHHCCCCHHHEEEEECCCHHHHHHHHHCCCCCCCEEEEEEECCCC
RDFNITIRTNIVDDTKKDLILYEATKQLYAFSELGGTIEEVAKSINENVENTWLKATKLD
CCEEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHHCCHHHHEEEEEEEC
EGNGKLGNVANQTITGGNDGTTSITNEHYIKAMEILEGYKADGFCLDGVTDESLQNTVKA
CCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHH
WVKRNKTKGNNIIAYLGIKDTDTIQQANTKSKEFNFEGIVNVGISGYYEGVKYTPTETAC
HHHCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCCCCEEEECCCCCEECCEEECCCCCEE
YIAGLATGKRLKESICNEKTIFEDVEPRLSKEEVENCLEAGTLILVKEDDEIIVVDDVNT
EEEEHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHCCEEEEEECCCCEEEEECCHH
LKKYSEEQNETWGYIRGIKFMNAVDGDTALKRKEFIGKVPNEGTGRLALICALKQYFEVL
HHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
EKEGVIEDFTVEIDEELQAKAKNDEVFWKWDAKYVNVMKRIYGTGYLR
HHCCCCEEEEEEECHHHHHCCCCCCEEEEECHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ATGVWNENNRPTIPGFYNRFKALAEKRIGTGIHGILAMPVKANWGPIEKVVSIKDEKDL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECEECCCCHHHHHHHCCCHHHH
INKFGKDNTAYRLGRLSLLGQPKELLLYRLTDGAEKISSVMLKDTEDTDILKIETLYPTT
HHHHCCCCCCEEEEHHHHCCCCHHHEEEEECCCHHHHHHHHHCCCCCCCEEEEEEECCCC
RDFNITIRTNIVDDTKKDLILYEATKQLYAFSELGGTIEEVAKSINENVENTWLKATKLD
CCEEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHHCCHHHHEEEEEEEC
EGNGKLGNVANQTITGGNDGTTSITNEHYIKAMEILEGYKADGFCLDGVTDESLQNTVKA
CCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHH
WVKRNKTKGNNIIAYLGIKDTDTIQQANTKSKEFNFEGIVNVGISGYYEGVKYTPTETAC
HHHCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCCCCEEEECCCCCEECCEEECCCCCEE
YIAGLATGKRLKESICNEKTIFEDVEPRLSKEEVENCLEAGTLILVKEDDEIIVVDDVNT
EEEEHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHCCEEEEEECCCCEEEEECCHH
LKKYSEEQNETWGYIRGIKFMNAVDGDTALKRKEFIGKVPNEGTGRLALICALKQYFEVL
HHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
EKEGVIEDFTVEIDEELQAKAKNDEVFWKWDAKYVNVMKRIYGTGYLR
HHCCCCEEEEEEECHHHHHCCCCCCEEEEECHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7704261; 8969508; 9384377; 7489895 [H]