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The map label for this gene is xkdP [H]

Identifier: 226949573

GI number: 226949573

Start: 2573154

End: 2573843

Strand: Reverse

Name: xkdP [H]

Synonym: CLM_2510

Alternate gene names: 226949573

Gene position: 2573843-2573154 (Counterclockwise)

Preceding gene: 226949574

Following gene: 226949572

Centisome position: 61.94

GC content: 30.72

Gene sequence:

>690_bases
TTGTTAAGTGTCTCTTTTTTATTTGAGGTGATAAAATTGGATGTATATTTAAGAAATGAAAAAGAAAAAACAACATTCCA
ATTTCCTGTTAATCCATTAGACAATATAATGATAAATCGTAGCAAAAAGTACGATACCGCTGATATAGTAGATTATGGAG
AGGTGGATATAAGTGATAAAGGTAAAAGAATAAAAGAGTTAAGTTTTTTAACATTATTACCTAAAGAATATGATACTTAT
TGCAGATATAGAAACATTCCCAAGCCTGTAGAAGCTATAGATAAATTAGAGAAGTGGATGGAGCAGGAAGAATCTATTAG
ATTAATAATTACAGACTTTGGGTTTAACAATCTAGTAAATATTAGCTCTATAAGTGAAGAAGAAAGAGGAGGAGAAACAG
GAGATAAGTATATTACCATTAGCTTTAGAACTTATAGGGAATTAAAGATACAAACGTTAGCTCCAGCTAAGATAGCCCCT
ACGGTAAAAACGGTAGCTTTAAAGAATAATAGACCAACTACAAAATCTAATTCTAGAATATATGTAGTTAAGCAAGGAGA
CTCTCTTTGGAAGATAGCTAAGTGGTGGTATGGGAATAGTTCTAAATGGAATGTTATATATCAGAAAAATAGAAATATTA
TAGGACCCAATCCTAATATAATCAGAGCTGGCCAAAAGTTGGTGATGTAA

Upstream 100 bases:

>100_bases
AAAATATATATTAGAAAATACTAGCATTATGGATGAAAAGTATAAAAAAGCCGCAGATGCATTAAAATAAAAAATAGTAT
AGCTAAAGGAGATGCCTAAA

Downstream 100 bases:

>100_bases
TGGCTACTATAATACTTAGGAATAAATATAAGATAGACAATTTAATCGAAGGAATACAGCTAAGTGAAGCTATAGATGGT
ATAGCATATACTGCAACTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MLSVSFLFEVIKLDVYLRNEKEKTTFQFPVNPLDNIMINRSKKYDTADIVDYGEVDISDKGKRIKELSFLTLLPKEYDTY
CRYRNIPKPVEAIDKLEKWMEQEESIRLIITDFGFNNLVNISSISEEERGGETGDKYITISFRTYRELKIQTLAPAKIAP
TVKTVALKNNRPTTKSNSRIYVVKQGDSLWKIAKWWYGNSSKWNVIYQKNRNIIGPNPNIIRAGQKLVM

Sequences:

>Translated_229_residues
MLSVSFLFEVIKLDVYLRNEKEKTTFQFPVNPLDNIMINRSKKYDTADIVDYGEVDISDKGKRIKELSFLTLLPKEYDTY
CRYRNIPKPVEAIDKLEKWMEQEESIRLIITDFGFNNLVNISSISEEERGGETGDKYITISFRTYRELKIQTLAPAKIAP
TVKTVALKNNRPTTKSNSRIYVVKQGDSLWKIAKWWYGNSSKWNVIYQKNRNIIGPNPNIIRAGQKLVM
>Mature_229_residues
MLSVSFLFEVIKLDVYLRNEKEKTTFQFPVNPLDNIMINRSKKYDTADIVDYGEVDISDKGKRIKELSFLTLLPKEYDTY
CRYRNIPKPVEAIDKLEKWMEQEESIRLIITDFGFNNLVNISSISEEERGGETGDKYITISFRTYRELKIQTLAPAKIAP
TVKTVALKNNRPTTKSNSRIYVVKQGDSLWKIAKWWYGNSSKWNVIYQKNRNIIGPNPNIIRAGQKLVM

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 26671; Mature: 26671

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSVSFLFEVIKLDVYLRNEKEKTTFQFPVNPLDNIMINRSKKYDTADIVDYGEVDISDK
CCHHHHHHHHHHEEEEEECCCCCEEEEECCCCCCHHEEECCCCCCCCCCEECCCEEECCC
GKRIKELSFLTLLPKEYDTYCRYRNIPKPVEAIDKLEKWMEQEESIRLIITDFGFNNLVN
CCHHHHHHEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEE
ISSISEEERGGETGDKYITISFRTYRELKIQTLAPAKIAPTVKTVALKNNRPTTKSNSRI
CCCCCHHHCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCEE
YVVKQGDSLWKIAKWWYGNSSKWNVIYQKNRNIIGPNPNIIRAGQKLVM
EEEECCCCEEEEEHEEECCCCEEEEEEECCCEEECCCCCEEECCHHHCC
>Mature Secondary Structure
MLSVSFLFEVIKLDVYLRNEKEKTTFQFPVNPLDNIMINRSKKYDTADIVDYGEVDISDK
CCHHHHHHHHHHEEEEEECCCCCEEEEECCCCCCHHEEECCCCCCCCCCEECCCEEECCC
GKRIKELSFLTLLPKEYDTYCRYRNIPKPVEAIDKLEKWMEQEESIRLIITDFGFNNLVN
CCHHHHHHEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEE
ISSISEEERGGETGDKYITISFRTYRELKIQTLAPAKIAPTVKTVALKNNRPTTKSNSRI
CCCCCHHHCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCEE
YVVKQGDSLWKIAKWWYGNSSKWNVIYQKNRNIIGPNPNIIRAGQKLVM
EEEECCCCEEEEEHEEECCCCEEEEEEECCCEEECCCCCEEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]