Click here to switch to the map view.

The map label for this gene is yclF [H]

Identifier: 226949010

GI number: 226949010

Start: 1973592

End: 1974971

Strand: Reverse

Name: yclF [H]

Synonym: CLM_1924

Alternate gene names: 226949010

Gene position: 1974971-1973592 (Counterclockwise)

Preceding gene: 226949013

Following gene: 226949005

Centisome position: 47.53

GC content: 34.28

Gene sequence:

>1380_bases
ATGGCAAAAGCTGAAAATTCAAAACATCCTTCAGGTCTTTATATCTGTGGGATGACAGTTGCTTGGGAAAGATTTTCATT
TTATGGTGTAAAATCTGTACTTATTCTTTTTTTAGCAACTCAAATTATTAAAGGTGGTTTTGGCTTAAGCAAAGCGGATG
CGGCATCTTTGGTATCTACTTACGCAGCGCTAACTTATTTAGCACCAGTAATAGGTGGTTGGATTTGTGATCGTTATCTA
GGAGCAAGATACTGCGTAGTATTAGGTACTTTATTAATGGCTGCTGGTAACTTTGTCCTTTTTCTAAATCAAGGTAAGCT
TGGAGTCTATGCAATGATTATATTAGTAACTATTGGTACTGGTTTCTTTAAAGGAAATCTAAATACAATGGTTGGTCTTT
TGTATGATCAAAATGATTCTAGAAAAGATGGTGCATTCTCAATTATGTATTCGTTTACAAATATAGGTGCTATGTTTGGA
CCTCTTTTATTTGGACTTTTTGCAGATCAAATATTTTCTACAAAAATTAATGGAGAAATAGCTCACTATGGATACAAAGC
TGTTTTCTTAGGTGGAGCTATAGCCTGTCTGCTATCAGGTCTTTCCTTTGCCCTTGGTGTTAAAAAGACAATGGGGGATT
CTGGTAAAATAGCAGCTGCTAAACTCACTCCTGCTACAACAGGCGCCGATAATAAAAAACAATCAACTGCACCTTTAACA
AAGGCTGAGAAAAATAGAACTATAGTTATATTTGTATTAACATTCTTTTCTATATTCTTCTGGACAGCTTATAATCAGGC
CTCTACATCTATAGCTCTATATACTAGAGATTTCATAGATATGAGTATAGGAAGCTTTACTATGCCAGTACCCTGGCTAG
ATTCATTTAATGGATTTATGTGTGTTATATTAGGACCTATAATGTCTGCTCTTTGGATTAAGCTTGAAAAGTCTAAAAGA
GGTGATTTAAATATAACACAAAAAATGGCTCTTGGCTTTGTACTATTAGCTGTTGGTTTTGTATTTATGATATTTGCAGT
ATTGCAAAGAGGCGGTTCTGCTGACCCTGCGATAAAAGCTAGTGTAATTTGGGTATTATTATTTTATGTATTACAAACTA
CTGGAGAAATGTGTTTCTCACCAATTGGAAACTCAATGGTTAATAGACTTGCACCACCTAAATATGCTTCTGTATTAATG
GGAGTTTGGTTCTTAAGTACTTTTGCAGCTAATAAATTAGCCGGATACGGACAGGCGTTCATAGACAAATTAGGACCATT
ACAAGTATTTATAGCCATTCCTGTAGCTCTTATTGCAAATGCTATAATAATATTTGCACTTAATAGAAAATTAACTAATA
TGGCTGAGCAATTTGATTAA

Upstream 100 bases:

>100_bases
TTAATATTTATTGGTTTTATTATATTTTGTTATATATTAAGTTTTTAACTTAATCATATATGTTTTAACATTAACTTTTA
AATAAGGGGGGTTTTATTAA

Downstream 100 bases:

>100_bases
TATAAAAGTCCCACATTTTATTGTGGGATTTTTATTAATTTATTAAACCGTTTTTAAATTCTTCATCCATTATAATATGC
CTAACTAATTTTATATTTAA

Product: amino acid/peptide transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 459; Mature: 458

Protein sequence:

>459_residues
MAKAENSKHPSGLYICGMTVAWERFSFYGVKSVLILFLATQIIKGGFGLSKADAASLVSTYAALTYLAPVIGGWICDRYL
GARYCVVLGTLLMAAGNFVLFLNQGKLGVYAMIILVTIGTGFFKGNLNTMVGLLYDQNDSRKDGAFSIMYSFTNIGAMFG
PLLFGLFADQIFSTKINGEIAHYGYKAVFLGGAIACLLSGLSFALGVKKTMGDSGKIAAAKLTPATTGADNKKQSTAPLT
KAEKNRTIVIFVLTFFSIFFWTAYNQASTSIALYTRDFIDMSIGSFTMPVPWLDSFNGFMCVILGPIMSALWIKLEKSKR
GDLNITQKMALGFVLLAVGFVFMIFAVLQRGGSADPAIKASVIWVLLFYVLQTTGEMCFSPIGNSMVNRLAPPKYASVLM
GVWFLSTFAANKLAGYGQAFIDKLGPLQVFIAIPVALIANAIIIFALNRKLTNMAEQFD

Sequences:

>Translated_459_residues
MAKAENSKHPSGLYICGMTVAWERFSFYGVKSVLILFLATQIIKGGFGLSKADAASLVSTYAALTYLAPVIGGWICDRYL
GARYCVVLGTLLMAAGNFVLFLNQGKLGVYAMIILVTIGTGFFKGNLNTMVGLLYDQNDSRKDGAFSIMYSFTNIGAMFG
PLLFGLFADQIFSTKINGEIAHYGYKAVFLGGAIACLLSGLSFALGVKKTMGDSGKIAAAKLTPATTGADNKKQSTAPLT
KAEKNRTIVIFVLTFFSIFFWTAYNQASTSIALYTRDFIDMSIGSFTMPVPWLDSFNGFMCVILGPIMSALWIKLEKSKR
GDLNITQKMALGFVLLAVGFVFMIFAVLQRGGSADPAIKASVIWVLLFYVLQTTGEMCFSPIGNSMVNRLAPPKYASVLM
GVWFLSTFAANKLAGYGQAFIDKLGPLQVFIAIPVALIANAIIIFALNRKLTNMAEQFD
>Mature_458_residues
AKAENSKHPSGLYICGMTVAWERFSFYGVKSVLILFLATQIIKGGFGLSKADAASLVSTYAALTYLAPVIGGWICDRYLG
ARYCVVLGTLLMAAGNFVLFLNQGKLGVYAMIILVTIGTGFFKGNLNTMVGLLYDQNDSRKDGAFSIMYSFTNIGAMFGP
LLFGLFADQIFSTKINGEIAHYGYKAVFLGGAIACLLSGLSFALGVKKTMGDSGKIAAAKLTPATTGADNKKQSTAPLTK
AEKNRTIVIFVLTFFSIFFWTAYNQASTSIALYTRDFIDMSIGSFTMPVPWLDSFNGFMCVILGPIMSALWIKLEKSKRG
DLNITQKMALGFVLLAVGFVFMIFAVLQRGGSADPAIKASVIWVLLFYVLQTTGEMCFSPIGNSMVNRLAPPKYASVLMG
VWFLSTFAANKLAGYGQAFIDKLGPLQVFIAIPVALIANAIIIFALNRKLTNMAEQFD

Specific function: Unknown

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family [H]

Homologues:

Organism=Escherichia coli, GI1787922, Length=497, Percent_Identity=27.1629778672032, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1790572, Length=444, Percent_Identity=29.5045045045045, Blast_Score=152, Evalue=4e-38,
Organism=Escherichia coli, GI1786927, Length=454, Percent_Identity=28.4140969162996, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI1789911, Length=449, Percent_Identity=26.7260579064588, Blast_Score=129, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 49687; Mature: 49556

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAENSKHPSGLYICGMTVAWERFSFYGVKSVLILFLATQIIKGGFGLSKADAASLVST
CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
YAALTYLAPVIGGWICDRYLGARYCVVLGTLLMAAGNFVLFLNQGKLGVYAMIILVTIGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCC
GFFKGNLNTMVGLLYDQNDSRKDGAFSIMYSFTNIGAMFGPLLFGLFADQIFSTKINGEI
CCEECCHHHHEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
AHYGYKAVFLGGAIACLLSGLSFALGVKKTMGDSGKIAAAKLTPATTGADNKKQSTAPLT
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
KAEKNRTIVIFVLTFFSIFFWTAYNQASTSIALYTRDFIDMSIGSFTMPVPWLDSFNGFM
CCCCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHCCCCCCCCCCCHHCCCCHH
CVILGPIMSALWIKLEKSKRGDLNITQKMALGFVLLAVGFVFMIFAVLQRGGSADPAIKA
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
SVIWVLLFYVLQTTGEMCFSPIGNSMVNRLAPPKYASVLMGVWFLSTFAANKLAGYGQAF
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH
IDKLGPLQVFIAIPVALIANAIIIFALNRKLTNMAEQFD
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKAENSKHPSGLYICGMTVAWERFSFYGVKSVLILFLATQIIKGGFGLSKADAASLVST
CCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
YAALTYLAPVIGGWICDRYLGARYCVVLGTLLMAAGNFVLFLNQGKLGVYAMIILVTIGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCC
GFFKGNLNTMVGLLYDQNDSRKDGAFSIMYSFTNIGAMFGPLLFGLFADQIFSTKINGEI
CCEECCHHHHEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
AHYGYKAVFLGGAIACLLSGLSFALGVKKTMGDSGKIAAAKLTPATTGADNKKQSTAPLT
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
KAEKNRTIVIFVLTFFSIFFWTAYNQASTSIALYTRDFIDMSIGSFTMPVPWLDSFNGFM
CCCCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHCCCCCCCCCCCHHCCCCHH
CVILGPIMSALWIKLEKSKRGDLNITQKMALGFVLLAVGFVFMIFAVLQRGGSADPAIKA
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
SVIWVLLFYVLQTTGEMCFSPIGNSMVNRLAPPKYASVLMGVWFLSTFAANKLAGYGQAF
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH
IDKLGPLQVFIAIPVALIANAIIIFALNRKLTNMAEQFD
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]