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The map label for this gene is 226949002

Identifier: 226949002

GI number: 226949002

Start: 1966793

End: 1967380

Strand: Reverse

Name: 226949002

Synonym: CLM_1916

Alternate gene names: NA

Gene position: 1967380-1966793 (Counterclockwise)

Preceding gene: 226949005

Following gene: 226948995

Centisome position: 47.35

GC content: 29.42

Gene sequence:

>588_bases
ATGAAAAAAATTTTTATAGATACAGAAACTACAGGTTTAGAACCTGGTGAAATTATACAACTTACTTATTGTGTTTGTGA
TATAAATTTTAGAGGTGAAGAGAAAGTTTCCTTCGCCAAAAACTTCTTTTTTGATGTAGATTATATTGAAGAATCTGCAG
AAGCTATTCATGGTTTTAGCGTAGAAAAATTAAAGATTTTATCTAAGGGCAAAAAATTTAAAGATTTAGCTTCAGAAATA
AGTTCCGATTTAAAAGATGGGATCTTTATAGCTCATAATGTAAATTTTGATAGAAAATTTGTTACTGCTGAATTTAATAG
ATTAAATGATATGAATTGGATTCCTAAAGAATTCTTCTGCACCATGGAATATTTTAAGCCCATTGTAAAAGCTACCACCA
GAACAGGTAAATTAAAAAAGCCTAGACTAGAAGAAGCAGTTGATTTTTTAGATATAGATAAAAAAATAGTTCTAAAGGGA
GCTAAAAAACTTTTTAACTGTGATGATGTTGGATTTCATGATGCTAGATATGATGTAGCCGCCCTTGTATCCTGCTATTA
TAGAGCTAAGAGGTTAGGATATTCTTAG

Upstream 100 bases:

>100_bases
TATTGAAAAATTCATATATTATATAATTATATAAAGTTTAATTATATAATATTTATAACTATTTAAGTTACAGACCTAAT
GTATAAAGGAGATTTGCTTT

Downstream 100 bases:

>100_bases
TTAATTTAACTTGAACTTTATAAGTAACTCTGAAATGAATTGGCTCTAGTAGAATTATAATATTCAAAAAAATTCAAAGA
TATTTGCTATAATTAAAGGC

Product: putative DNA polymerase III subunit epsilon

Products: NA

Alternate protein names: Exonuclease; DNA Polymerase III Epsilon Subunit

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MKKIFIDTETTGLEPGEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEESAEAIHGFSVEKLKILSKGKKFKDLASEI
SSDLKDGIFIAHNVNFDRKFVTAEFNRLNDMNWIPKEFFCTMEYFKPIVKATTRTGKLKKPRLEEAVDFLDIDKKIVLKG
AKKLFNCDDVGFHDARYDVAALVSCYYRAKRLGYS

Sequences:

>Translated_195_residues
MKKIFIDTETTGLEPGEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEESAEAIHGFSVEKLKILSKGKKFKDLASEI
SSDLKDGIFIAHNVNFDRKFVTAEFNRLNDMNWIPKEFFCTMEYFKPIVKATTRTGKLKKPRLEEAVDFLDIDKKIVLKG
AKKLFNCDDVGFHDARYDVAALVSCYYRAKRLGYS
>Mature_195_residues
MKKIFIDTETTGLEPGEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEESAEAIHGFSVEKLKILSKGKKFKDLASEI
SSDLKDGIFIAHNVNFDRKFVTAEFNRLNDMNWIPKEFFCTMEYFKPIVKATTRTGKLKKPRLEEAVDFLDIDKKIVLKG
AKKLFNCDDVGFHDARYDVAALVSCYYRAKRLGYS

Specific function: Unknown

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22509; Mature: 22509

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIFIDTETTGLEPGEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEESAEAIHGFS
CCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCC
VEKLKILSKGKKFKDLASEISSDLKDGIFIAHNVNFDRKFVTAEFNRLNDMNWIPKEFFC
HHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEHHHHHCCCCCCCCHHHHH
TMEYFKPIVKATTRTGKLKKPRLEEAVDFLDIDKKIVLKGAKKLFNCDDVGFHDARYDVA
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHH
ALVSCYYRAKRLGYS
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKIFIDTETTGLEPGEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEESAEAIHGFS
CCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCC
VEKLKILSKGKKFKDLASEISSDLKDGIFIAHNVNFDRKFVTAEFNRLNDMNWIPKEFFC
HHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEHHHHHCCCCCCCCHHHHH
TMEYFKPIVKATTRTGKLKKPRLEEAVDFLDIDKKIVLKGAKKLFNCDDVGFHDARYDVA
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHH
ALVSCYYRAKRLGYS
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA