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The map label for this gene is yoeC [H]

Identifier: 226948751

GI number: 226948751

Start: 1700131

End: 1700736

Strand: Direct

Name: yoeC [H]

Synonym: CLM_1652

Alternate gene names: 226948751

Gene position: 1700131-1700736 (Clockwise)

Preceding gene: 226948750

Following gene: 226948752

Centisome position: 40.91

GC content: 27.89

Gene sequence:

>606_bases
TTGGGGATAAAAAGGCCTGCTAAACCAATTACTAGTACAACTAAAGTATTAGATATACAAGACTATCTCAGATACAAAAA
TGAAAGAGATTATGTATTATTTATACTAGGAATTACAACAGGGTATAGAGCAGGTGACTTAGTTAAATTAAAGGTTAGAG
ATATTAAAGAAGCTTTAAAGAGAAATGAATTTACAATTTATGAAGGAAAGAAAATGAATTGTAAAAACATAAAAGACAGA
AATAAAAAACCGAGATCGGTTGAAGTACTTCCTAAGCTAGCTAAAATATTAAAAGATTGGATTAAAAATAAAAAGGACTA
TGAATATGTATTCCAATCTAGGAAAGGTATTAATCAGCATATAGGAGTGCAAGCGGTAAGTAATATATTAAAAGAGGCAG
GAGAATATTTCGATTTAAATGATATAACTGCACATAGTATGAGAAAGACGTATGCATATAAAATATACATGGAAAGTGAT
AAAAATATAGTTGCAGTTAAAGAGTTATTGGGCCATAGAAGTATAGAAGAAACTAAAAAGTATATAGGACTAGATAAAGA
AAAGTATCATCAATATTCAAAATCATTAGAGGAATATATTAGATGA

Upstream 100 bases:

>100_bases
TAGAAAAGTTAAGAAAGAAAAAATAACAGATAGCTTAAAAGAGTGTATGGGACATAGTAGTTATAAGAAAATAAAAGGAA
CAATAAGGCAGGTGAGATAG

Downstream 100 bases:

>100_bases
TATTTTATTTTTTTTATTAGTCAATGTTTAAAAAATTATATAGTAAGTATTGAAGGTATAAAATTAAGTGCATATATTAG
AAGTTAATTTTTAGAATGAA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MGIKRPAKPITSTTKVLDIQDYLRYKNERDYVLFILGITTGYRAGDLVKLKVRDIKEALKRNEFTIYEGKKMNCKNIKDR
NKKPRSVEVLPKLAKILKDWIKNKKDYEYVFQSRKGINQHIGVQAVSNILKEAGEYFDLNDITAHSMRKTYAYKIYMESD
KNIVAVKELLGHRSIEETKKYIGLDKEKYHQYSKSLEEYIR

Sequences:

>Translated_201_residues
MGIKRPAKPITSTTKVLDIQDYLRYKNERDYVLFILGITTGYRAGDLVKLKVRDIKEALKRNEFTIYEGKKMNCKNIKDR
NKKPRSVEVLPKLAKILKDWIKNKKDYEYVFQSRKGINQHIGVQAVSNILKEAGEYFDLNDITAHSMRKTYAYKIYMESD
KNIVAVKELLGHRSIEETKKYIGLDKEKYHQYSKSLEEYIR
>Mature_200_residues
GIKRPAKPITSTTKVLDIQDYLRYKNERDYVLFILGITTGYRAGDLVKLKVRDIKEALKRNEFTIYEGKKMNCKNIKDRN
KKPRSVEVLPKLAKILKDWIKNKKDYEYVFQSRKGINQHIGVQAVSNILKEAGEYFDLNDITAHSMRKTYAYKIYMESDK
NIVAVKELLGHRSIEETKKYIGLDKEKYHQYSKSLEEYIR

Specific function: Fimb Is One Of The 2 Regulatory Proteins Which Control The Phase Variation Of Type 1 Fimbriae In E. coli. These Proteins Mediate The Periodic Inversion Of A 300bp DNA Segment That Harbors The Promoter For The Fimbrial Structural Gene, Fima. Fimb Switches

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 23708; Mature: 23577

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIKRPAKPITSTTKVLDIQDYLRYKNERDYVLFILGITTGYRAGDLVKLKVRDIKEALK
CCCCCCCCCCCCHHHHEEHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEHHHHHHHHHH
RNEFTIYEGKKMNCKNIKDRNKKPRSVEVLPKLAKILKDWIKNKKDYEYVFQSRKGINQH
CCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHH
IGVQAVSNILKEAGEYFDLNDITAHSMRKTYAYKIYMESDKNIVAVKELLGHRSIEETKK
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEEEEEEECCCCCHHHHHHHCCCCHHHHHH
YIGLDKEKYHQYSKSLEEYIR
HHCCCHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
GIKRPAKPITSTTKVLDIQDYLRYKNERDYVLFILGITTGYRAGDLVKLKVRDIKEALK
CCCCCCCCCCCHHHHEEHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEHHHHHHHHHH
RNEFTIYEGKKMNCKNIKDRNKKPRSVEVLPKLAKILKDWIKNKKDYEYVFQSRKGINQH
CCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHH
IGVQAVSNILKEAGEYFDLNDITAHSMRKTYAYKIYMESDKNIVAVKELLGHRSIEETKK
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEEEEEEECCCCCHHHHHHHCCCCHHHHHH
YIGLDKEKYHQYSKSLEEYIR
HHCCCHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]