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The map label for this gene is yoqD [H]

Identifier: 226948719

GI number: 226948719

Start: 1688016

End: 1688717

Strand: Direct

Name: yoqD [H]

Synonym: CLM_1619

Alternate gene names: 226948719

Gene position: 1688016-1688717 (Clockwise)

Preceding gene: 226948718

Following gene: 226948720

Centisome position: 40.62

GC content: 27.78

Gene sequence:

>702_bases
ATGAAAGAATTGCAAGTATTAAACAATAAAAACTTAACTTTAGAAAGCATAGAAGTTACTAGGATGCTAGGAAAAGAACA
CAAACAATTATTAAGAGAAATTAGAGATATTTCAAATATTTTGGAGAGTGAAAATTTTTCACCATCAAAGTATTTTATAG
AAAGTGAATATATAACTGCTCAAAATAAAAAGCACCCATGTTATTTAGTTACTAAAATGGGATGCGAATTATTAGGTAAT
AAATTACAAGGAGCAAAAGGAACAATATTTACAGCTGAGTATGTAGAAAGATTTAACCAAATGGAAAATATAAAAATACC
AAAGCTTAGTAAAGAGGTACAAGCAATATTCACACTAGATAATAGAACAATGGAGATAGAAGAAAAGGTAACTAACTTAG
AAAACAATATCCCACTTTTTAATGTGGAGTGTAAAGAGTTACAAGCTTTAGTAAGAAAAGTAGGAATTAAAACATTGGGA
GGTTACAAAACATCAGCCTATAATGATAGATCATTACGTACCAAAGTATATTCAGATATTCAAGGACAACTTAGAAGAGA
ATTCGGCGTAACTAGATATGAAGCAATAAAAAGAAAACAATTAAATAAAGCCAAAGAAATATTAGAAAATTACACAGTCC
CAGTTTATTTAAAAGAAGAAATATTTAGTACAAACAATCAAGAAGAATGGAGATGTATATAA

Upstream 100 bases:

>100_bases
TTATGAAAATGGAAGAGTACCATTACCACCAACTTTAAAAAAATTTAGTGATAAATTAGATGTTGACTTAGCAAAAGCAC
TTATGGAAGGGGATATGTAA

Downstream 100 bases:

>100_bases
ATGTTTTATACAGTTGACCAAATAACAGAAATGTTACAAATAAGCAAATCTAAGGCTTATAAGATAACAGCCAGCCTTAA
TAAGGAATTAAAAAAAATGG

Product: phage regulatory protein, Rha family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MKELQVLNNKNLTLESIEVTRMLGKEHKQLLREIRDISNILESENFSPSKYFIESEYITAQNKKHPCYLVTKMGCELLGN
KLQGAKGTIFTAEYVERFNQMENIKIPKLSKEVQAIFTLDNRTMEIEEKVTNLENNIPLFNVECKELQALVRKVGIKTLG
GYKTSAYNDRSLRTKVYSDIQGQLRREFGVTRYEAIKRKQLNKAKEILENYTVPVYLKEEIFSTNNQEEWRCI

Sequences:

>Translated_233_residues
MKELQVLNNKNLTLESIEVTRMLGKEHKQLLREIRDISNILESENFSPSKYFIESEYITAQNKKHPCYLVTKMGCELLGN
KLQGAKGTIFTAEYVERFNQMENIKIPKLSKEVQAIFTLDNRTMEIEEKVTNLENNIPLFNVECKELQALVRKVGIKTLG
GYKTSAYNDRSLRTKVYSDIQGQLRREFGVTRYEAIKRKQLNKAKEILENYTVPVYLKEEIFSTNNQEEWRCI
>Mature_233_residues
MKELQVLNNKNLTLESIEVTRMLGKEHKQLLREIRDISNILESENFSPSKYFIESEYITAQNKKHPCYLVTKMGCELLGN
KLQGAKGTIFTAEYVERFNQMENIKIPKLSKEVQAIFTLDNRTMEIEEKVTNLENNIPLFNVECKELQALVRKVGIKTLG
GYKTSAYNDRSLRTKVYSDIQGQLRREFGVTRYEAIKRKQLNKAKEILENYTVPVYLKEEIFSTNNQEEWRCI

Specific function: Unknown

COG id: COG3646

COG function: function code S; Uncharacterized phage-encoded protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005039
- InterPro:   IPR014054
- InterPro:   IPR019104 [H]

Pfam domain/function: PF03374 ANT; PF09669 Phage_pRha [H]

EC number: NA

Molecular weight: Translated: 27257; Mature: 27257

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKELQVLNNKNLTLESIEVTRMLGKEHKQLLREIRDISNILESENFSPSKYFIESEYITA
CCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEC
QNKKHPCYLVTKMGCELLGNKLQGAKGTIFTAEYVERFNQMENIKIPKLSKEVQAIFTLD
CCCCCCEEEEHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCHHHHHHHHEEEC
NRTMEIEEKVTNLENNIPLFNVECKELQALVRKVGIKTLGGYKTSAYNDRSLRTKVYSDI
CCEEHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHH
QGQLRREFGVTRYEAIKRKQLNKAKEILENYTVPVYLKEEIFSTNNQEEWRCI
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKELQVLNNKNLTLESIEVTRMLGKEHKQLLREIRDISNILESENFSPSKYFIESEYITA
CCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEC
QNKKHPCYLVTKMGCELLGNKLQGAKGTIFTAEYVERFNQMENIKIPKLSKEVQAIFTLD
CCCCCCEEEEHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCHHHHHHHHEEEC
NRTMEIEEKVTNLENNIPLFNVECKELQALVRKVGIKTLGGYKTSAYNDRSLRTKVYSDI
CCEEHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHH
QGQLRREFGVTRYEAIKRKQLNKAKEILENYTVPVYLKEEIFSTNNQEEWRCI
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]