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The map label for this gene is spoVB [H]

Identifier: 226948699

GI number: 226948699

Start: 1660984

End: 1662591

Strand: Direct

Name: spoVB [H]

Synonym: CLM_1597

Alternate gene names: 226948699

Gene position: 1660984-1662591 (Clockwise)

Preceding gene: 226948698

Following gene: 226948701

Centisome position: 39.97

GC content: 30.53

Gene sequence:

>1608_bases
ATGAAAAAGCAATCAGTAACTAAAGGGTTTGCCATATTATCCATAGCGGGAATGCTAGCCAAGGTTTTTTCTTTAATTTA
CATACCAGCATTAATAAATATACTTACAGATCAAGGATATGGTATTTATATGGCTGCTTATCAGATTTTTACATTTATAT
TTATTTTAACTAATTCTGGTATACCTGTAGCCATATCTAAGCTTGTATCAGAGCTTATAGCAACAGAAAATTATAAAGAT
GCTCTAAAGTCTTTTAGACTTGCCAGATATATGTTGTTATTTTTAGGATTTATAATGGCCCTGTTTACCGTTTGTGCATC
AGGTTTTCTATCTAAGCGTATAGGGTACCCAAAAGCTCAATTATCAGTATTGGCTTTAGCACCATCTATTTTATTTACCT
CTGTTGCCTCTGCTTATAGAGGATATTTTCAAGGTATGGGTAATATGACACCTACTGCTATATCTCAAGTTATAGAACAA
CTTATAAATGTAATATTTTCCTTATTGTTTGCAGCAATGTTTATAAAATATGGATTAGAAGCAGGTTGTGCAGGTGGTAC
CGTTGGAACCTCATTAGGAGCTTTAGCTTCAGCTTTGTTTTTGATGTATTGTCATAAAAAAAATGGTGCTATAAAAGTAA
AGGATAAAAGTAACATAAAAGATGAAAAATATAGTGTAGTTTATTTGATGAAAAAAATTATATATTATGGGTTACCTATA
ACATTATGTGTAGGTATGAATTCAGCAGGAGCTTTGATAGATGTATATAACACCAAGGCCAGACTAATGGTAGCTGGATT
TAATGAAGTTAATGCCACCGTACTTTATGGATATTTAGCCAAGTATCAACAGTTTATAAATGTACCTATAGCTATAATAA
GTTCACTTTCTATGGCAGTTCTTCCTGTTATAGCAGGGGCTGCAGCTAAAGGGGATAAAAAACAGGTTAAAAGCAACATA
AATTATGCTTTTAGATCTTGTTTTTTAATTTCAATACCAGCTGCTGTAGGATTAGGATTTTTAGCAGATCCTATATATAA
AATGTTACATATAGGTGGCGGTGTAGAAATAATGAGGTATGGTGTTATAGTTTTAGTTTTAATGGCTGTAGCTCAGATAC
AAACTACTATACTTCAAAGCATAGGGAAACTTTATGCTGCTACATTATATTCTCTGATTGGAATATGTTTTAAAATATTT
ACAAATTATGTATTAATAGCAAATCCAAGCATAAATGTAATGGGAGCTATATATGGTAGTGCTGTTGGGTTTTTAATACC
TATTATATTAAATCATAGAATGATTAAAAAGTCTTTGAAGGTTAAATTTAACATTATAACTCCTGCTATAAAGCCTTTTA
TAGCTGCACAAATAATGGGTTTTATAATTGTACCTTTTCATAGTGTAGTTAACCATGGTATAGTAACTTTATTTAACAAA
GCTTATATAGCTAATGCAGTTGGAACTATGGTTGCTATAATATTGGGCGTATTTGTATATGCTTATTCATTGATACTAAT
AGGAGGATTAAGAAAGAAAGATTTAGATAGAATGCCTTCTAGATTAATAAAATTTATACCTAAGTTTGTTAGAAAAAGAA
TAAGATAA

Upstream 100 bases:

>100_bases
AACAAAACCATAGCGGAAACTTTACCACCGATTTTTAAGAAAATAAAGAAAGATGTGTTTAAGTTTTAATAATATATAAG
TATGGGATGGGGAGTACATT

Downstream 100 bases:

>100_bases
AAAAACATTAGATTGGCAAGGTGTTTTCTTGCTAATCTAATGTTTTTTATTTGTAATATTTATAAGTATAAACATTAAGG
AGAATCCAGAAAATATTATT

Product: stage V sporulation protein B

Products: NA

Alternate protein names: Stage III sporulation protein F [H]

Number of amino acids: Translated: 535; Mature: 535

Protein sequence:

>535_residues
MKKQSVTKGFAILSIAGMLAKVFSLIYIPALINILTDQGYGIYMAAYQIFTFIFILTNSGIPVAISKLVSELIATENYKD
ALKSFRLARYMLLFLGFIMALFTVCASGFLSKRIGYPKAQLSVLALAPSILFTSVASAYRGYFQGMGNMTPTAISQVIEQ
LINVIFSLLFAAMFIKYGLEAGCAGGTVGTSLGALASALFLMYCHKKNGAIKVKDKSNIKDEKYSVVYLMKKIIYYGLPI
TLCVGMNSAGALIDVYNTKARLMVAGFNEVNATVLYGYLAKYQQFINVPIAIISSLSMAVLPVIAGAAAKGDKKQVKSNI
NYAFRSCFLISIPAAVGLGFLADPIYKMLHIGGGVEIMRYGVIVLVLMAVAQIQTTILQSIGKLYAATLYSLIGICFKIF
TNYVLIANPSINVMGAIYGSAVGFLIPIILNHRMIKKSLKVKFNIITPAIKPFIAAQIMGFIIVPFHSVVNHGIVTLFNK
AYIANAVGTMVAIILGVFVYAYSLILIGGLRKKDLDRMPSRLIKFIPKFVRKRIR

Sequences:

>Translated_535_residues
MKKQSVTKGFAILSIAGMLAKVFSLIYIPALINILTDQGYGIYMAAYQIFTFIFILTNSGIPVAISKLVSELIATENYKD
ALKSFRLARYMLLFLGFIMALFTVCASGFLSKRIGYPKAQLSVLALAPSILFTSVASAYRGYFQGMGNMTPTAISQVIEQ
LINVIFSLLFAAMFIKYGLEAGCAGGTVGTSLGALASALFLMYCHKKNGAIKVKDKSNIKDEKYSVVYLMKKIIYYGLPI
TLCVGMNSAGALIDVYNTKARLMVAGFNEVNATVLYGYLAKYQQFINVPIAIISSLSMAVLPVIAGAAAKGDKKQVKSNI
NYAFRSCFLISIPAAVGLGFLADPIYKMLHIGGGVEIMRYGVIVLVLMAVAQIQTTILQSIGKLYAATLYSLIGICFKIF
TNYVLIANPSINVMGAIYGSAVGFLIPIILNHRMIKKSLKVKFNIITPAIKPFIAAQIMGFIIVPFHSVVNHGIVTLFNK
AYIANAVGTMVAIILGVFVYAYSLILIGGLRKKDLDRMPSRLIKFIPKFVRKRIR
>Mature_535_residues
MKKQSVTKGFAILSIAGMLAKVFSLIYIPALINILTDQGYGIYMAAYQIFTFIFILTNSGIPVAISKLVSELIATENYKD
ALKSFRLARYMLLFLGFIMALFTVCASGFLSKRIGYPKAQLSVLALAPSILFTSVASAYRGYFQGMGNMTPTAISQVIEQ
LINVIFSLLFAAMFIKYGLEAGCAGGTVGTSLGALASALFLMYCHKKNGAIKVKDKSNIKDEKYSVVYLMKKIIYYGLPI
TLCVGMNSAGALIDVYNTKARLMVAGFNEVNATVLYGYLAKYQQFINVPIAIISSLSMAVLPVIAGAAAKGDKKQVKSNI
NYAFRSCFLISIPAAVGLGFLADPIYKMLHIGGGVEIMRYGVIVLVLMAVAQIQTTILQSIGKLYAATLYSLIGICFKIF
TNYVLIANPSINVMGAIYGSAVGFLIPIILNHRMIKKSLKVKFNIITPAIKPFIAAQIMGFIIVPFHSVVNHGIVTLFNK
AYIANAVGTMVAIILGVFVYAYSLILIGGLRKKDLDRMPSRLIKFIPKFVRKRIR

Specific function: Involved, directly or indirectly, in spore cortex biosynthesis. Affects only indirectly the expression of late sporulation genes [H]

COG id: COG2244

COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002528
- InterPro:   IPR002797
- InterPro:   IPR014249 [H]

Pfam domain/function: PF01943 Polysacc_synt [H]

EC number: NA

Molecular weight: Translated: 58341; Mature: 58341

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQSVTKGFAILSIAGMLAKVFSLIYIPALINILTDQGYGIYMAAYQIFTFIFILTNSG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
IPVAISKLVSELIATENYKDALKSFRLARYMLLFLGFIMALFTVCASGFLSKRIGYPKAQ
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LSVLALAPSILFTSVASAYRGYFQGMGNMTPTAISQVIEQLINVIFSLLFAAMFIKYGLE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AGCAGGTVGTSLGALASALFLMYCHKKNGAIKVKDKSNIKDEKYSVVYLMKKIIYYGLPI
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCH
TLCVGMNSAGALIDVYNTKARLMVAGFNEVNATVLYGYLAKYQQFINVPIAIISSLSMAV
HEEECCCCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LPVIAGAAAKGDKKQVKSNINYAFRSCFLISIPAAVGLGFLADPIYKMLHIGGGVEIMRY
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
GVIVLVLMAVAQIQTTILQSIGKLYAATLYSLIGICFKIFTNYVLIANPSINVMGAIYGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHH
AVGFLIPIILNHRMIKKSLKVKFNIITPAIKPFIAAQIMGFIIVPFHSVVNHGIVTLFNK
HHHHHHHHHHHHHHHHHHHHEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
AYIANAVGTMVAIILGVFVYAYSLILIGGLRKKDLDRMPSRLIKFIPKFVRKRIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKQSVTKGFAILSIAGMLAKVFSLIYIPALINILTDQGYGIYMAAYQIFTFIFILTNSG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
IPVAISKLVSELIATENYKDALKSFRLARYMLLFLGFIMALFTVCASGFLSKRIGYPKAQ
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LSVLALAPSILFTSVASAYRGYFQGMGNMTPTAISQVIEQLINVIFSLLFAAMFIKYGLE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AGCAGGTVGTSLGALASALFLMYCHKKNGAIKVKDKSNIKDEKYSVVYLMKKIIYYGLPI
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCH
TLCVGMNSAGALIDVYNTKARLMVAGFNEVNATVLYGYLAKYQQFINVPIAIISSLSMAV
HEEECCCCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LPVIAGAAAKGDKKQVKSNINYAFRSCFLISIPAAVGLGFLADPIYKMLHIGGGVEIMRY
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
GVIVLVLMAVAQIQTTILQSIGKLYAATLYSLIGICFKIFTNYVLIANPSINVMGAIYGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHH
AVGFLIPIILNHRMIKKSLKVKFNIITPAIKPFIAAQIMGFIIVPFHSVVNHGIVTLFNK
HHHHHHHHHHHHHHHHHHHHEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
AYIANAVGTMVAIILGVFVYAYSLILIGGLRKKDLDRMPSRLIKFIPKFVRKRIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1744050; 9384377 [H]