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The map label for this gene is yjcD [H]

Identifier: 226948693

GI number: 226948693

Start: 1652069

End: 1654081

Strand: Direct

Name: yjcD [H]

Synonym: CLM_1591

Alternate gene names: 226948693

Gene position: 1652069-1654081 (Clockwise)

Preceding gene: 226948692

Following gene: 226948694

Centisome position: 39.76

GC content: 24.99

Gene sequence:

>2013_bases
ATGATAGATTATAGTTTCTTAGATCAGTATCAAAAGGAAGCGGTTAAATGTCATAAGAATAATACATTAGTGGTAGCTCC
ACCTGGTTCCGGTAAAACCACTGTTATTATAAATAGAGTTGTGCATTTAATAGAAGATTTAAAAATAAATCCTAATAATA
TATTAGTAATAACTTTTACTAGGGCTGCAGCTATGAATATGAAGGAAAGATATAAAAAAATAAGTGTCAGTAGGAGAACA
CCTTTTTTTGGAACATTTCATGGCCTTTTTTATAAAATATTAAATAGACACTTTAAAAATATAAATATAATAAGTAGCAA
GGAAGTCTATTCTCTAATAAATAATATACTTATATCTTATTTGGATTCTGTAAATGAGGATAAGGTAAGAGACGTTTTAA
ATGATATATCACTTTTTAAAACTAGTGGGTTAAATATGAAGGATTTTGTTCCTAAAATTGATAAAAGTATATTTGAACAC
TGTTTTAATAGCTATGAAGAGTATAAAGATAAAAAGGAACTTTTAGATTTTGATGATTTGCAAATTAATATGTTTAAACT
TTTAAAGGAAGATGAAAGAATTCTTAAGGGTTATAATAAACTATTTAAATATATATTAGTAGATGAATTTCAAGATTGTG
ATACATTGCAAATAAATATTCTTCAAATGTTAAGTGAGGGGAATTCTCTATTCGCAGTAGGGGATGAGGATCAGTGTATA
TATTCCTTTAGAGGATCTAAGCCAGAGTGTATGGTAGATTTTAATCATTATTTTAAAAAAGGAGAAAAGATATATCTAAG
ATATAATTATAGAAGTCCTAAAAATATAGTAGGGATTTCTAAAAATCTTATTAAAAATAATAAATTAAGAAATAATAAGA
GAATAGAAGCTTATAATGATTATGATAAGAATATAGTGTTAAAATCCTTTCTGAATGAAAGGGAGCAAGCAGAGGAAATA
AGTAAAATAATTAATGATATTATAAAGAAGGGCTATGGATATAAAGATGTAGCCATACTTTATAGAACTAATATGGAAAG
TAGAAGTTTAACAGATTTGTTTTTTAAAAAAAGAATACCTTTTAGACTTTTAGATAAGGGTTATAATTTTTTTAATCATT
TTGTATGTAGGGATATACTAGCTTATATGCAAGTTTGTATAGATTCCTATGATAAGAAAAGTTTTTTAAAGATTATAAAT
AAACCCTTTAGGTATATAAGTAAATTAAATGTGGAAAGGGTAAGAAGATATAAATATGCTAAAAATAGCTTTGATATATT
AAAGGAACAAAAGGATATACAACCTTTTCAAATTAAGAATTTAGAAAATCTTGAAAAGGATATAAACAAAATGAATAAAA
TGAGTGCCCAAGATGCCATAGGTCACATAGTCCATAATTTAGGCTATGAAGAGTATATTAAAGAATATAGTGAAAGAATA
AAAATAGATAAAGAAGAACTTTTACAAATAGTAGATGAATTAAAAGAAGCAGCTGAAGAATATACAAGTATTTTAACCTT
TTTAGTTCATGTAGAGGAAGTAGAAAAAGAAATAAATAAAAAAGAAATAAATAAAGATAGTGTAATATTAAGTACAATAC
ATGGAGTTAAGGGTATGGAATTTAAAAATGTAGTTATTGTGAATTGTAACGAAGGTAATATTCCTTACAGTAAAGCAGAT
GAGGAAGTTAATATAGAGGAAGAGAGAAGACTTTTTTATGTAGGTATTACAAGAGCAAAAGAAAACTTATATTTAACTGT
ACCAAAGGTTATAAGAGGGAAAAATAAAGAAAACTCTAATTTTATAAAAGAATGCAAGTTAGATAAAGAATTATTAGAAA
ATGATTATTTTAAAGGAAAAGAAATAGTGATTCATAAGGTATTTGGTGAAGGAATCATTGAAAATCAAGGGGAAAATTAT
GTAGAGATAGGATTTTTAGATGGAACTAAAAGAAAATTTGATAGAAATGTTATAACTAAAAGTAATATTATTAAAAAGAA
AAGTGTATCATAA

Upstream 100 bases:

>100_bases
TTATAAATAATAGTAAATGTTGTTATTGTAAATTTGATATTTTCTTTAGCTTCTAGTAAAGTATACTTAATTAACATTAG
AAAGTTAAGGGAGTTTTTAT

Downstream 100 bases:

>100_bases
AAAATCTATTTTAGTAACAAATAAACTTCTATTCTAAATATATAAGTAGCAAATTTTATATTACACACATAATAATATAA
GGAAAACCTGATAAAATAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 670; Mature: 670

Protein sequence:

>670_residues
MIDYSFLDQYQKEAVKCHKNNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFTRAAAMNMKERYKKISVSRRT
PFFGTFHGLFYKILNRHFKNINIISSKEVYSLINNILISYLDSVNEDKVRDVLNDISLFKTSGLNMKDFVPKIDKSIFEH
CFNSYEEYKDKKELLDFDDLQINMFKLLKEDERILKGYNKLFKYILVDEFQDCDTLQINILQMLSEGNSLFAVGDEDQCI
YSFRGSKPECMVDFNHYFKKGEKIYLRYNYRSPKNIVGISKNLIKNNKLRNNKRIEAYNDYDKNIVLKSFLNEREQAEEI
SKIINDIIKKGYGYKDVAILYRTNMESRSLTDLFFKKRIPFRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKKSFLKIIN
KPFRYISKLNVERVRRYKYAKNSFDILKEQKDIQPFQIKNLENLEKDINKMNKMSAQDAIGHIVHNLGYEEYIKEYSERI
KIDKEELLQIVDELKEAAEEYTSILTFLVHVEEVEKEINKKEINKDSVILSTIHGVKGMEFKNVVIVNCNEGNIPYSKAD
EEVNIEEERRLFYVGITRAKENLYLTVPKVIRGKNKENSNFIKECKLDKELLENDYFKGKEIVIHKVFGEGIIENQGENY
VEIGFLDGTKRKFDRNVITKSNIIKKKSVS

Sequences:

>Translated_670_residues
MIDYSFLDQYQKEAVKCHKNNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFTRAAAMNMKERYKKISVSRRT
PFFGTFHGLFYKILNRHFKNINIISSKEVYSLINNILISYLDSVNEDKVRDVLNDISLFKTSGLNMKDFVPKIDKSIFEH
CFNSYEEYKDKKELLDFDDLQINMFKLLKEDERILKGYNKLFKYILVDEFQDCDTLQINILQMLSEGNSLFAVGDEDQCI
YSFRGSKPECMVDFNHYFKKGEKIYLRYNYRSPKNIVGISKNLIKNNKLRNNKRIEAYNDYDKNIVLKSFLNEREQAEEI
SKIINDIIKKGYGYKDVAILYRTNMESRSLTDLFFKKRIPFRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKKSFLKIIN
KPFRYISKLNVERVRRYKYAKNSFDILKEQKDIQPFQIKNLENLEKDINKMNKMSAQDAIGHIVHNLGYEEYIKEYSERI
KIDKEELLQIVDELKEAAEEYTSILTFLVHVEEVEKEINKKEINKDSVILSTIHGVKGMEFKNVVIVNCNEGNIPYSKAD
EEVNIEEERRLFYVGITRAKENLYLTVPKVIRGKNKENSNFIKECKLDKELLENDYFKGKEIVIHKVFGEGIIENQGENY
VEIGFLDGTKRKFDRNVITKSNIIKKKSVS
>Mature_670_residues
MIDYSFLDQYQKEAVKCHKNNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFTRAAAMNMKERYKKISVSRRT
PFFGTFHGLFYKILNRHFKNINIISSKEVYSLINNILISYLDSVNEDKVRDVLNDISLFKTSGLNMKDFVPKIDKSIFEH
CFNSYEEYKDKKELLDFDDLQINMFKLLKEDERILKGYNKLFKYILVDEFQDCDTLQINILQMLSEGNSLFAVGDEDQCI
YSFRGSKPECMVDFNHYFKKGEKIYLRYNYRSPKNIVGISKNLIKNNKLRNNKRIEAYNDYDKNIVLKSFLNEREQAEEI
SKIINDIIKKGYGYKDVAILYRTNMESRSLTDLFFKKRIPFRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKKSFLKIIN
KPFRYISKLNVERVRRYKYAKNSFDILKEQKDIQPFQIKNLENLEKDINKMNKMSAQDAIGHIVHNLGYEEYIKEYSERI
KIDKEELLQIVDELKEAAEEYTSILTFLVHVEEVEKEINKKEINKDSVILSTIHGVKGMEFKNVVIVNCNEGNIPYSKAD
EEVNIEEERRLFYVGITRAKENLYLTVPKVIRGKNKENSNFIKECKLDKELLENDYFKGKEIVIHKVFGEGIIENQGENY
VEIGFLDGTKRKFDRNVITKSNIIKKKSVS

Specific function: May be involved in the generation of recombinogenic substrates for the subsequent action of recA [H]

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI48994965, Length=650, Percent_Identity=30.3076923076923, Blast_Score=261, Evalue=1e-70,
Organism=Escherichia coli, GI2367296, Length=689, Percent_Identity=28.5921625544267, Blast_Score=258, Evalue=9e-70,
Organism=Saccharomyces cerevisiae, GI6322369, Length=466, Percent_Identity=27.6824034334764, Blast_Score=135, Evalue=2e-32,
Organism=Saccharomyces cerevisiae, GI6324477, Length=635, Percent_Identity=22.8346456692913, Blast_Score=103, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014017
- InterPro:   IPR000212
- InterPro:   IPR014016 [H]

Pfam domain/function: PF00580 UvrD-helicase [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 78906; Mature: 78906

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDYSFLDQYQKEAVKCHKNNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFT
CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCEECCCCEEEEEEC
RAAAMNMKERYKKISVSRRTPFFGTFHGLFYKILNRHFKNINIISSKEVYSLINNILISY
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHH
LDSVNEDKVRDVLNDISLFKTSGLNMKDFVPKIDKSIFEHCFNSYEEYKDKKELLDFDDL
HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC
QINMFKLLKEDERILKGYNKLFKYILVDEFQDCDTLQINILQMLSEGNSLFAVGDEDQCI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCEE
YSFRGSKPECMVDFNHYFKKGEKIYLRYNYRSPKNIVGISKNLIKNNKLRNNKRIEAYND
EEECCCCCCEEEEHHHHHCCCCEEEEEEECCCCCCHHCCHHHHHHCCCCCCCCCEEEECC
YDKNIVLKSFLNEREQAEEISKIINDIIKKGYGYKDVAILYRTNMESRSLTDLFFKKRIP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCC
FRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKKSFLKIINKPFRYISKLNVERVRRYKYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
KNSFDILKEQKDIQPFQIKNLENLEKDINKMNKMSAQDAIGHIVHNLGYEEYIKEYSERI
CCHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
KIDKEELLQIVDELKEAAEEYTSILTFLVHVEEVEKEINKKEINKDSVILSTIHGVKGME
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC
FKNVVIVNCNEGNIPYSKADEEVNIEEERRLFYVGITRAKENLYLTVPKVIRGKNKENSN
CCCEEEEECCCCCCCCCCCCCCCCCHHHCEEEEEEEEECCCCEEEEECHHHCCCCCCCCH
FIKECKLDKELLENDYFKGKEIVIHKVFGEGIIENQGENYVEIGFLDGTKRKFDRNVITK
HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHCCHHHH
SNIIKKKSVS
HHHCCCCCCC
>Mature Secondary Structure
MIDYSFLDQYQKEAVKCHKNNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFT
CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCEECCCCEEEEEEC
RAAAMNMKERYKKISVSRRTPFFGTFHGLFYKILNRHFKNINIISSKEVYSLINNILISY
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHH
LDSVNEDKVRDVLNDISLFKTSGLNMKDFVPKIDKSIFEHCFNSYEEYKDKKELLDFDDL
HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC
QINMFKLLKEDERILKGYNKLFKYILVDEFQDCDTLQINILQMLSEGNSLFAVGDEDQCI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCEE
YSFRGSKPECMVDFNHYFKKGEKIYLRYNYRSPKNIVGISKNLIKNNKLRNNKRIEAYND
EEECCCCCCEEEEHHHHHCCCCEEEEEEECCCCCCHHCCHHHHHHCCCCCCCCCEEEECC
YDKNIVLKSFLNEREQAEEISKIINDIIKKGYGYKDVAILYRTNMESRSLTDLFFKKRIP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCC
FRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKKSFLKIINKPFRYISKLNVERVRRYKYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
KNSFDILKEQKDIQPFQIKNLENLEKDINKMNKMSAQDAIGHIVHNLGYEEYIKEYSERI
CCHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
KIDKEELLQIVDELKEAAEEYTSILTFLVHVEEVEKEINKKEINKDSVILSTIHGVKGME
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC
FKNVVIVNCNEGNIPYSKADEEVNIEEERRLFYVGITRAKENLYLTVPKVIRGKNKENSN
CCCEEEEECCCCCCCCCCCCCCCCCHHHCEEEEEEEEECCCCEEEEECHHHCCCCCCCCH
FIKECKLDKELLENDYFKGKEIVIHKVFGEGIIENQGENYVEIGFLDGTKRKFDRNVITK
HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHCCHHHH
SNIIKKKSVS
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]