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The map label for this gene is yxdM [H]

Identifier: 226948676

GI number: 226948676

Start: 1632515

End: 1634323

Strand: Direct

Name: yxdM [H]

Synonym: CLM_1572

Alternate gene names: 226948676

Gene position: 1632515-1634323 (Clockwise)

Preceding gene: 226948675

Following gene: 226948677

Centisome position: 39.29

GC content: 20.78

Gene sequence:

>1809_bases
ATGAGTTTTAATACTATAATTATAAATAACATAAAAAGGAATTTGAGGAAATATAGTGTTTTCATATTAAGTGGTGTAGT
GTCTGTGATAGTATATTATTTTTTTTCTTTGATTTTAAATAATATAGAATTGATACAGGATCCATTTACTATAGGCTTTG
TGGATAGTTTGAATTTTATACAATTTTTATTAATAATGGGTATATTTTTTTTGACGGATTATTCTATAAATATATTTCTA
GAGTCTAGAATAGAAGAATTTAAAATATTTTATAAGTTGGGGATTTCTCAGAACAAGATGAAAAAGATTATTTTTATAGA
AAGCTTATTTTTAGGTATTATAATAACGATATTTGGAATTATAATAGCCTTTGTATTTTCTAAATTTATGATGATGGGTA
TAGGAAGAACTTTAAATAAAAAAATAAATACAATAGGAAATTTTAAGGCTATAAAAGATACAACTAAAGTTTTTTTTATT
ATATTTATTATATGTGGTATAACTAAGGGAAGGTATATAAAAGGAATTAATAAGATATATAAAGCAAGAAAACCATCCCT
GTTTTTAAGTATGGTTTGTATAATAATGCTTATATGTTTATTTAAAATAAGCCAAAAAATCAATTATTTTAAATCCACAG
GAGGAATAAGTTTATTCTTTATATTGGGATTTTTATATACTTTATTATCTTTAACGGAGATGTTTCCTTATGTATTGACT
AGAATATCAAAAATTAAGCTAATATATATGGATAAAGTAAATATGATTTTTATATCAAATGTTAGAGAAAAAACTCTTCA
AAATAGAAATGTTCTTTTTATTATGACTATGTTTTTGTCTATATCTATATTTATATTTGGAATTTTATATGTTCAAAAAG
ATCTAATAGATAAAAAGAAAGATATTTTATATCCTATTGATATAGCTTATGTAGTTAAAGAAAGAGATTATAATAATATT
ATAGATAACAAATTAAAAGAAAATAGTATTAATTTTCAAAAGGTAAAAGTTACATTTTATGATGTAGAAAGTGCAAAATA
TAGCGTTATATCAGAATCGGAATACAATAAAATAGCTAATAAACTTTCTTATCCAATTTATAATATAAAGCAAGGCAAAG
CTGTAATATTATCTAATATCGATATGAGTGAAGAAGATATTAAAAAATATTATTTCAATGAAGTAATAAATATTAATGGT
AATAAAGTTAAGATAGATAAAATAGGAGAAAAAAGTATATTTCAAAGTAAAACTATGGGAAATATTATTATAGTAAAAGA
TAGTTCTTTAATAGCATTACCAAAGGATAAAAAGATAAATTATTATATGTATAATATACAAAGTATTAAAAAAAGTATAA
AAGAATTAGAAGGTATAAAAAAAAGTTTATATGGTGAAAAAATATATATAAAGCAGCTAGAATTAATGAAAGAAAGAGGA
GCAGCCTATGGTTTTTTCTATCTTTGTAGTTCTGTAGCTTTAGTTTTTTTTCTTATGGGAGTAAGCTTTTTATACTATAA
ATTTTATGATGACATAAAGAAAGAAAAAGGTAAATATGATATATTGATAAATTTGGGGATATCTAAAAAAACAGTAAATT
CTATAATAAATAAAGAAATGTTAGTTATGTTTTTCGTACCTTTTTTAATTAGTTCATTGAATTTGTTTTTTATATTTAAG
TTAAATAGATTGATATATAATTACAAAGGAGATGTTTCTGAAATACATGTTTTTATAATATATCTATTTATATATACAGT
TTATTTTATGTTTTGGAAAAGGAGGATTATGGAAGAAATAAATGAATAA

Upstream 100 bases:

>100_bases
AAAGATGGTGAAATATATAGTGAAATTTATAAGGGAGAAAATCAGGAAAACTTTTATAAGGATATATTAAATTTTAATAT
GTTCTTAGGAGGAAGAATCA

Downstream 100 bases:

>100_bases
ATGTGGTATCAATAGTGTATTGAATAACATATAATGGTAAAGAAATTAATATGTAGGAAAGATATAGTATGAATTTTATG
CCCTTTGATAATTATAATAT

Product: peptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 602; Mature: 601

Protein sequence:

>602_residues
MSFNTIIINNIKRNLRKYSVFILSGVVSVIVYYFFSLILNNIELIQDPFTIGFVDSLNFIQFLLIMGIFFLTDYSINIFL
ESRIEEFKIFYKLGISQNKMKKIIFIESLFLGIIITIFGIIIAFVFSKFMMMGIGRTLNKKINTIGNFKAIKDTTKVFFI
IFIICGITKGRYIKGINKIYKARKPSLFLSMVCIIMLICLFKISQKINYFKSTGGISLFFILGFLYTLLSLTEMFPYVLT
RISKIKLIYMDKVNMIFISNVREKTLQNRNVLFIMTMFLSISIFIFGILYVQKDLIDKKKDILYPIDIAYVVKERDYNNI
IDNKLKENSINFQKVKVTFYDVESAKYSVISESEYNKIANKLSYPIYNIKQGKAVILSNIDMSEEDIKKYYFNEVINING
NKVKIDKIGEKSIFQSKTMGNIIIVKDSSLIALPKDKKINYYMYNIQSIKKSIKELEGIKKSLYGEKIYIKQLELMKERG
AAYGFFYLCSSVALVFFLMGVSFLYYKFYDDIKKEKGKYDILINLGISKKTVNSIINKEMLVMFFVPFLISSLNLFFIFK
LNRLIYNYKGDVSEIHVFIIYLFIYTVYFMFWKRRIMEEINE

Sequences:

>Translated_602_residues
MSFNTIIINNIKRNLRKYSVFILSGVVSVIVYYFFSLILNNIELIQDPFTIGFVDSLNFIQFLLIMGIFFLTDYSINIFL
ESRIEEFKIFYKLGISQNKMKKIIFIESLFLGIIITIFGIIIAFVFSKFMMMGIGRTLNKKINTIGNFKAIKDTTKVFFI
IFIICGITKGRYIKGINKIYKARKPSLFLSMVCIIMLICLFKISQKINYFKSTGGISLFFILGFLYTLLSLTEMFPYVLT
RISKIKLIYMDKVNMIFISNVREKTLQNRNVLFIMTMFLSISIFIFGILYVQKDLIDKKKDILYPIDIAYVVKERDYNNI
IDNKLKENSINFQKVKVTFYDVESAKYSVISESEYNKIANKLSYPIYNIKQGKAVILSNIDMSEEDIKKYYFNEVINING
NKVKIDKIGEKSIFQSKTMGNIIIVKDSSLIALPKDKKINYYMYNIQSIKKSIKELEGIKKSLYGEKIYIKQLELMKERG
AAYGFFYLCSSVALVFFLMGVSFLYYKFYDDIKKEKGKYDILINLGISKKTVNSIINKEMLVMFFVPFLISSLNLFFIFK
LNRLIYNYKGDVSEIHVFIIYLFIYTVYFMFWKRRIMEEINE
>Mature_601_residues
SFNTIIINNIKRNLRKYSVFILSGVVSVIVYYFFSLILNNIELIQDPFTIGFVDSLNFIQFLLIMGIFFLTDYSINIFLE
SRIEEFKIFYKLGISQNKMKKIIFIESLFLGIIITIFGIIIAFVFSKFMMMGIGRTLNKKINTIGNFKAIKDTTKVFFII
FIICGITKGRYIKGINKIYKARKPSLFLSMVCIIMLICLFKISQKINYFKSTGGISLFFILGFLYTLLSLTEMFPYVLTR
ISKIKLIYMDKVNMIFISNVREKTLQNRNVLFIMTMFLSISIFIFGILYVQKDLIDKKKDILYPIDIAYVVKERDYNNII
DNKLKENSINFQKVKVTFYDVESAKYSVISESEYNKIANKLSYPIYNIKQGKAVILSNIDMSEEDIKKYYFNEVININGN
KVKIDKIGEKSIFQSKTMGNIIIVKDSSLIALPKDKKINYYMYNIQSIKKSIKELEGIKKSLYGEKIYIKQLELMKERGA
AYGFFYLCSSVALVFFLMGVSFLYYKFYDDIKKEKGKYDILINLGISKKTVNSIINKEMLVMFFVPFLISSLNLFFIFKL
NRLIYNYKGDVSEIHVFIIYLFIYTVYFMFWKRRIMEEINE

Specific function: Part of the ABC transporter complex yxdLM which could be involved in peptide resistance [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003838 [H]

Pfam domain/function: PF02687 FtsX [H]

EC number: NA

Molecular weight: Translated: 70694; Mature: 70563

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFNTIIINNIKRNLRKYSVFILSGVVSVIVYYFFSLILNNIELIQDPFTIGFVDSLNFI
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEHHHHHHHH
QFLLIMGIFFLTDYSINIFLESRIEEFKIFYKLGISQNKMKKIIFIESLFLGIIITIFGI
HHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IIAFVFSKFMMMGIGRTLNKKINTIGNFKAIKDTTKVFFIIFIICGITKGRYIKGINKIY
HHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
KARKPSLFLSMVCIIMLICLFKISQKINYFKSTGGISLFFILGFLYTLLSLTEMFPYVLT
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RISKIKLIYMDKVNMIFISNVREKTLQNRNVLFIMTMFLSISIFIFGILYVQKDLIDKKK
HHHHEEEEEECCCCEEEECCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
DILYPIDIAYVVKERDYNNIIDNKLKENSINFQKVKVTFYDVESAKYSVISESEYNKIAN
CCEEEEEEEEEEECCCCCHHHHCCHHCCCCCEEEEEEEEEEECCCCEEEECCHHHHHHHH
KLSYPIYNIKQGKAVILSNIDMSEEDIKKYYFNEVININGNKVKIDKIGEKSIFQSKTMG
HHCCCCEEECCCCEEEEECCCCCHHHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCC
NIIIVKDSSLIALPKDKKINYYMYNIQSIKKSIKELEGIKKSLYGEKIYIKQLELMKERG
CEEEEECCCEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
AAYGFFYLCSSVALVFFLMGVSFLYYKFYDDIKKEKGKYDILINLGISKKTVNSIINKEM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHH
LVMFFVPFLISSLNLFFIFKLNRLIYNYKGDVSEIHVFIIYLFIYTVYFMFWKRRIMEEI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NE
CC
>Mature Secondary Structure 
SFNTIIINNIKRNLRKYSVFILSGVVSVIVYYFFSLILNNIELIQDPFTIGFVDSLNFI
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEHHHHHHHH
QFLLIMGIFFLTDYSINIFLESRIEEFKIFYKLGISQNKMKKIIFIESLFLGIIITIFGI
HHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IIAFVFSKFMMMGIGRTLNKKINTIGNFKAIKDTTKVFFIIFIICGITKGRYIKGINKIY
HHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
KARKPSLFLSMVCIIMLICLFKISQKINYFKSTGGISLFFILGFLYTLLSLTEMFPYVLT
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RISKIKLIYMDKVNMIFISNVREKTLQNRNVLFIMTMFLSISIFIFGILYVQKDLIDKKK
HHHHEEEEEECCCCEEEECCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
DILYPIDIAYVVKERDYNNIIDNKLKENSINFQKVKVTFYDVESAKYSVISESEYNKIAN
CCEEEEEEEEEEECCCCCHHHHCCHHCCCCCEEEEEEEEEEECCCCEEEECCHHHHHHHH
KLSYPIYNIKQGKAVILSNIDMSEEDIKKYYFNEVININGNKVKIDKIGEKSIFQSKTMG
HHCCCCEEECCCCEEEEECCCCCHHHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCC
NIIIVKDSSLIALPKDKKINYYMYNIQSIKKSIKELEGIKKSLYGEKIYIKQLELMKERG
CEEEEECCCEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
AAYGFFYLCSSVALVFFLMGVSFLYYKFYDDIKKEKGKYDILINLGISKKTVNSIINKEM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHH
LVMFFVPFLISSLNLFFIFKLNRLIYNYKGDVSEIHVFIIYLFIYTVYFMFWKRRIMEEI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8867804; 9384377; 7952181 [H]