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The map label for this gene is yfiK [H]

Identifier: 226948658

GI number: 226948658

Start: 1613766

End: 1614419

Strand: Direct

Name: yfiK [H]

Synonym: CLM_1553

Alternate gene names: 226948658

Gene position: 1613766-1614419 (Clockwise)

Preceding gene: 226948657

Following gene: 226948659

Centisome position: 38.84

GC content: 26.91

Gene sequence:

>654_bases
ATGAATAAAACTAATATTATAGTAGCAGATGATGAAAAATTAATAAGAGAAGGATTAAAAATAATTCTCTCTACCTACAA
TGATATTGAAGTTGTAGGTCTTGCCGGTGACGGGAGGGAAGCATTAAGTTTATGTAAAGAAAAAGATGTACAAGTAGTTT
TGATGGATATTAGAATGCCCAATTGTGATGGAGTATTAGGTACGAGAATCATAAAAGAACAGTTTCCACACATAAAAATA
TTAATATTAACTACATTTAATGATAAAGAATATATTCATGAAGCTTTAAAATTTGGAGCTTCAGGGTATTTACTAAAAGA
TAGTTCTAATGAGTTAATTTATGAAGGCATAAAAGCCTGTGTAAAAGGAAATATAGTGGTTCACCCCGATGTGGCTAACA
ATATAATACTTAATACTACTTATGAAAAAGAATTAAATGATGATGATATAAGTTTAAAATATAATCTGACGGAAAGAGAA
ATTAATATAATAAGACAAATAGCTAATGGACTTTCTAATAAAGAAATAGCAGAAGAAATATATCTTTCTGAAGGAACTAT
AAAAAACAATATAAGTACCATACTTTCCAAATTAGATTTGAGAGATAGGACACAAATAGCTATATTTGCTTTTAAAAATA
ATATAGTTAATTAA

Upstream 100 bases:

>100_bases
TAACCGCTCTTTACTCCCGCTTTGAAGAAGATGGGGTATTAGAGCGGGTAGTCATCGGATAAAGCTCATGGAAAATTAAT
TTAATAAGGGGAAAAATAAA

Downstream 100 bases:

>100_bases
ATAATAAACAGAGTTCTAAGCTTCAGAGGGAGTTTTTATTCCCCCTGAAGCTTATTAACAGACTTCTTAGGAGTTTTACT
CCTTAGAAGTCGTTATCCTT

Product: LuxR family DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MNKTNIIVADDEKLIREGLKIILSTYNDIEVVGLAGDGREALSLCKEKDVQVVLMDIRMPNCDGVLGTRIIKEQFPHIKI
LILTTFNDKEYIHEALKFGASGYLLKDSSNELIYEGIKACVKGNIVVHPDVANNIILNTTYEKELNDDDISLKYNLTERE
INIIRQIANGLSNKEIAEEIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNNIVN

Sequences:

>Translated_217_residues
MNKTNIIVADDEKLIREGLKIILSTYNDIEVVGLAGDGREALSLCKEKDVQVVLMDIRMPNCDGVLGTRIIKEQFPHIKI
LILTTFNDKEYIHEALKFGASGYLLKDSSNELIYEGIKACVKGNIVVHPDVANNIILNTTYEKELNDDDISLKYNLTERE
INIIRQIANGLSNKEIAEEIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNNIVN
>Mature_217_residues
MNKTNIIVADDEKLIREGLKIILSTYNDIEVVGLAGDGREALSLCKEKDVQVVLMDIRMPNCDGVLGTRIIKEQFPHIKI
LILTTFNDKEYIHEALKFGASGYLLKDSSNELIYEGIKACVKGNIVVHPDVANNIILNTTYEKELNDDDISLKYNLTERE
INIIRQIANGLSNKEIAEEIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNNIVN

Specific function: Member of the two-component regulatory system yfiJ/yfiK [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=209, Percent_Identity=33.0143540669856, Blast_Score=110, Evalue=5e-26,
Organism=Escherichia coli, GI1788222, Length=213, Percent_Identity=29.5774647887324, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1787473, Length=218, Percent_Identity=30.7339449541284, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI1786747, Length=210, Percent_Identity=26.6666666666667, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790102, Length=208, Percent_Identity=27.4038461538462, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789937, Length=148, Percent_Identity=29.0540540540541, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788712, Length=213, Percent_Identity=27.2300469483568, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788546, Length=201, Percent_Identity=25.3731343283582, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24454; Mature: 24454

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTNIIVADDEKLIREGLKIILSTYNDIEVVGLAGDGREALSLCKEKDVQVVLMDIRMP
CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCEEEEEEEECC
NCDGVLGTRIIKEQFPHIKILILTTFNDKEYIHEALKFGASGYLLKDSSNELIYEGIKAC
CCCCHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHH
VKGNIVVHPDVANNIILNTTYEKELNDDDISLKYNLTEREINIIRQIANGLSNKEIAEEI
HCCCEEECCCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCHHHHHHH
YLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNNIVN
HHCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MNKTNIIVADDEKLIREGLKIILSTYNDIEVVGLAGDGREALSLCKEKDVQVVLMDIRMP
CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCEEEEEEEECC
NCDGVLGTRIIKEQFPHIKILILTTFNDKEYIHEALKFGASGYLLKDSSNELIYEGIKAC
CCCCHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHH
VKGNIVVHPDVANNIILNTTYEKELNDDDISLKYNLTEREINIIRQIANGLSNKEIAEEI
HCCCEEECCCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCHHHHHHH
YLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNNIVN
HHCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377 [H]