Click here to switch to the map view.

The map label for this gene is 226948652

Identifier: 226948652

GI number: 226948652

Start: 1607415

End: 1608686

Strand: Direct

Name: 226948652

Synonym: CLM_1547

Alternate gene names: NA

Gene position: 1607415-1608686 (Clockwise)

Preceding gene: 226948651

Following gene: 226948653

Centisome position: 38.68

GC content: 32.0

Gene sequence:

>1272_bases
ATGAGAATCTTAAAAAAAGGTGATAGAGGATCAGATGTTAGAAAAATTCAAGCAGTACTACAAAAGATAGGCTATGATGT
AGGGCCCATAGATGGAATATTTGGAAGTAATACAGAGGAAGCAGTTAAAAGGTTTCAACTGAATAATGGGTTAGTTGTGG
ATGGTATTATAGGACCTAAGACTTATGAGCTATTGAATAAGTTTATACTAGGTTACAATACTTATACTATAAAGCCTGGA
GATACTTTATATAATATAGCTAAAAGACACTATACTACTGTAGATAAAATAATGATTGCTAATCCTAATATAGACCCTAA
TAACCTTATTATAGGAAGTCAGATAATAGTTCCTATAGGCATTGATATAGTAGATACTAATGTTAACTATACTTACGAAA
TTATGGAAAAAGACATAATGGCTTTAAAAGAAAGATATCCTTTTATACAGGTAGGTGTTGCAGGAAAAAGTGTTTTAGGG
AAAAATTTATATTATATCAAATTAGGTGATGGGTCTAATGAAGTATTTTACAATGGAGCTCATCATTCATTAGAATGGAT
AACTGCATTATTGCTTATGAAATTTATTGAAGACTTTTCTAGAGCCTATAGTGAAGGCAGCAAAATAAAAGGATATAACA
TAAAAGATATTTGGAATAGAAGTAGTATTTATATAATGCCAATGGTAAATCCAGATGGGGTAGATTTAGTTATAAATGGA
CTTCAAAGGAATAATCCTTATTATGATGATTTAATAAAATGGAATAATGGCAGCACAGACTTTTCAAAAAATTGGCAAGC
TAATATAAAAGGAGTGGATTTAAATCATAATTATAATGCTTCTTGGTATGAGTCTAAAATTGCAGAAGAATCCTATGGTG
TGTATGGGCCAGGTCCTACTAGATATGGTGGGCCTTATCCCGAATCAGAACCTGAAAGCAGATCCGTTGCTGATTTTACA
AGGAATCATAACTTTAGATTAATATTAGCTTACCATAGTCAAGGGGAAGTAATATATTGGACTTATAGAGATATAATCCC
ACCGGGCGCAAGAGAAATTGGAGAATTATTTTCAAAAGTAAGTGGTTATGAGCTTTCAGAAACCGTTGGGATAGCCTCTT
ATGCAGGCTATAAGGACTGGTTCATAGCACAATTTAAAAGACCAGGTTTTACCATAGAAGTAGGAAAAGGGACGAATCCA
TTGCCTCTAAGTCAATTTGATAAAATATATAGAGACAATATAGAAATACTTTTATTGGCACCAATTGTTTAA

Upstream 100 bases:

>100_bases
ATGGTGCTTAATTATGATGGCTGTTTTAGATTGTATAGTAATAAAATTTAGGTACTCACTTGTGAGATCATAAAATCATA
TAATGCTATGAGGTGATTTT

Downstream 100 bases:

>100_bases
TTTGTAGTTGAGTTATTATTTATTAATTTATAGCTTATATATTCGTGCTAGGATTAGGATATAGTAATACTATTAGTATA
ATATATTATTATTTATTAAA

Product: zinc carboxypeptidase family protein

Products: NA

Alternate protein names: Endopeptidase I; Gamma-D-glutamyl-L-diamino acid endopeptidase I; Gamma-D-glutamyl-meso-diaminopimelate peptidase I [H]

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MRILKKGDRGSDVRKIQAVLQKIGYDVGPIDGIFGSNTEEAVKRFQLNNGLVVDGIIGPKTYELLNKFILGYNTYTIKPG
DTLYNIAKRHYTTVDKIMIANPNIDPNNLIIGSQIIVPIGIDIVDTNVNYTYEIMEKDIMALKERYPFIQVGVAGKSVLG
KNLYYIKLGDGSNEVFYNGAHHSLEWITALLLMKFIEDFSRAYSEGSKIKGYNIKDIWNRSSIYIMPMVNPDGVDLVING
LQRNNPYYDDLIKWNNGSTDFSKNWQANIKGVDLNHNYNASWYESKIAEESYGVYGPGPTRYGGPYPESEPESRSVADFT
RNHNFRLILAYHSQGEVIYWTYRDIIPPGAREIGELFSKVSGYELSETVGIASYAGYKDWFIAQFKRPGFTIEVGKGTNP
LPLSQFDKIYRDNIEILLLAPIV

Sequences:

>Translated_423_residues
MRILKKGDRGSDVRKIQAVLQKIGYDVGPIDGIFGSNTEEAVKRFQLNNGLVVDGIIGPKTYELLNKFILGYNTYTIKPG
DTLYNIAKRHYTTVDKIMIANPNIDPNNLIIGSQIIVPIGIDIVDTNVNYTYEIMEKDIMALKERYPFIQVGVAGKSVLG
KNLYYIKLGDGSNEVFYNGAHHSLEWITALLLMKFIEDFSRAYSEGSKIKGYNIKDIWNRSSIYIMPMVNPDGVDLVING
LQRNNPYYDDLIKWNNGSTDFSKNWQANIKGVDLNHNYNASWYESKIAEESYGVYGPGPTRYGGPYPESEPESRSVADFT
RNHNFRLILAYHSQGEVIYWTYRDIIPPGAREIGELFSKVSGYELSETVGIASYAGYKDWFIAQFKRPGFTIEVGKGTNP
LPLSQFDKIYRDNIEILLLAPIV
>Mature_423_residues
MRILKKGDRGSDVRKIQAVLQKIGYDVGPIDGIFGSNTEEAVKRFQLNNGLVVDGIIGPKTYELLNKFILGYNTYTIKPG
DTLYNIAKRHYTTVDKIMIANPNIDPNNLIIGSQIIVPIGIDIVDTNVNYTYEIMEKDIMALKERYPFIQVGVAGKSVLG
KNLYYIKLGDGSNEVFYNGAHHSLEWITALLLMKFIEDFSRAYSEGSKIKGYNIKDIWNRSSIYIMPMVNPDGVDLVING
LQRNNPYYDDLIKWNNGSTDFSKNWQANIKGVDLNHNYNASWYESKIAEESYGVYGPGPTRYGGPYPESEPESRSVADFT
RNHNFRLILAYHSQGEVIYWTYRDIIPPGAREIGELFSKVSGYELSETVGIASYAGYKDWFIAQFKRPGFTIEVGKGTNP
LPLSQFDKIYRDNIEILLLAPIV

Specific function: An endopeptidase which hydrolyzes the gamma-D-Glu- (L)meso-diaminopimelic acid bond of L-Ala-gamma-D-Glu-(L)meso- diaminopimelic acid and L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid(L)-D-Ala peptides. It is active on spore cortex peptidoglycan [H]

COG id: COG2866

COG function: function code E; Predicted carboxypeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

Organism=Homo sapiens, GI188536067, Length=203, Percent_Identity=26.6009852216749, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI221316749, Length=225, Percent_Identity=24.8888888888889, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI25143424, Length=209, Percent_Identity=25.3588516746411, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71990304, Length=196, Percent_Identity=29.0816326530612, Blast_Score=66, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71990310, Length=196, Percent_Identity=29.0816326530612, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000834
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF00246 Peptidase_M14 [H]

EC number: =3.4.19.11 [H]

Molecular weight: Translated: 47892; Mature: 47892

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILKKGDRGSDVRKIQAVLQKIGYDVGPIDGIFGSNTEEAVKRFQLNNGLVVDGIIGPK
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCH
TYELLNKFILGYNTYTIKPGDTLYNIAKRHYTTVDKIMIANPNIDPNNLIIGSQIIVPIG
HHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCEEHEEEEECCCCCCCCEEECCEEEEEEC
IDIVDTNVNYTYEIMEKDIMALKERYPFIQVGVAGKSVLGKNLYYIKLGDGSNEVFYNGA
EEEEECCCCEEEHHHHHHHHHHHHCCCEEEEECCCCHHHCCCEEEEEECCCCCCEEECCC
HHSLEWITALLLMKFIEDFSRAYSEGSKIKGYNIKDIWNRSSIYIMPMVNPDGVDLVING
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCEEEEEC
LQRNNPYYDDLIKWNNGSTDFSKNWQANIKGVDLNHNYNASWYESKIAEESYGVYGPGPT
HHCCCCCHHHHEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCC
RYGGPYPESEPESRSVADFTRNHNFRLILAYHSQGEVIYWTYRDIIPPGAREIGELFSKV
CCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHH
SGYELSETVGIASYAGYKDWFIAQFKRPGFTIEVGKGTNPLPLSQFDKIYRDNIEILLLA
CCCCHHHHHCHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEEE
PIV
CCC
>Mature Secondary Structure
MRILKKGDRGSDVRKIQAVLQKIGYDVGPIDGIFGSNTEEAVKRFQLNNGLVVDGIIGPK
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCH
TYELLNKFILGYNTYTIKPGDTLYNIAKRHYTTVDKIMIANPNIDPNNLIIGSQIIVPIG
HHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCEEHEEEEECCCCCCCCEEECCEEEEEEC
IDIVDTNVNYTYEIMEKDIMALKERYPFIQVGVAGKSVLGKNLYYIKLGDGSNEVFYNGA
EEEEECCCCEEEHHHHHHHHHHHHCCCEEEEECCCCHHHCCCEEEEEECCCCCCEEECCC
HHSLEWITALLLMKFIEDFSRAYSEGSKIKGYNIKDIWNRSSIYIMPMVNPDGVDLVING
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCEEEEEC
LQRNNPYYDDLIKWNNGSTDFSKNWQANIKGVDLNHNYNASWYESKIAEESYGVYGPGPT
HHCCCCCHHHHEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCC
RYGGPYPESEPESRSVADFTRNHNFRLILAYHSQGEVIYWTYRDIIPPGAREIGELFSKV
CCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHH
SGYELSETVGIASYAGYKDWFIAQFKRPGFTIEVGKGTNPLPLSQFDKIYRDNIEILLLA
CCCCHHHHHCHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEEE
PIV
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8503890; 3922755 [H]