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The map label for this gene is 226948645

Identifier: 226948645

GI number: 226948645

Start: 1600252

End: 1602018

Strand: Direct

Name: 226948645

Synonym: CLM_1540

Alternate gene names: NA

Gene position: 1600252-1602018 (Clockwise)

Preceding gene: 226948643

Following gene: 226948646

Centisome position: 38.51

GC content: 25.18

Gene sequence:

>1767_bases
ATGAAAAAAGCTTCCATAGATAGAAATTTTAGAAAAATAAAGAATTCCTATAGCCAGACAGAAGATATAGTACAACATTC
TAAAATTAATAGTTTGTGGGAACAAGAAGCTTCTATTAGAAAAAAATTAAAAAAGTTAGAGTCTATGAAAGATAAAAACA
TAAGGGATTTTAAAGAAGTCTATAATAATTATTCGCACCTTTTAGATTATATATCTAAAAAACTAGTAAAAGATTACAAT
ATAAAACATAATACGAATTTTGATTTTCATGAAATAATAAAAGGCAATAGAAAGAATTATTTAAAATCAGGAATAATGAG
TGTTCTTATAACTAGGCATATTCCAACTATGATATTTAAAGAATTTGATAGGATATTTCCGAAGAATCCTAAAGATGAGT
ATAAGAAAGTTAGACATATGAATAGAAAATTTTATCTTCATTTAGGAGAGACTAATACAGGAAAAACTTATAATTCTATG
GAAAGACTAAAAGAAAGTAAAAAAGGTATATATTTATCACCTCTCAGAATACTGGCCTTAGAAAATTTTGAAAAATTAAA
TAAAGAGGGTATAATGTGTAATCTTATAACTGGAGAAGAAGAAATAAAGAAAGAAAAGGCTCAACATGTATGTTGTACTA
TAGAGAAATTAGATATCAATGAAGAGTATGATGTAGCTATTATAGATGAAATACAAATGATAGATGATGATCAAAGAGGA
AGTGCTTGGACGAGAGCTATACTGGCATTAAGGTGTAAAGAAATACATGTTTGTGGAGCATTGAATACAAAAGAATTAAT
AATAAATATCATAGAAGATTGTGGAGATGAATATGAATTAAAAGAATACTTTAGAAATATACCTCTTAAAATTGAAGAAG
AGGCTTTTAAATTAAAAGATATAAAAAAAGGAGATGCATTAGTTACTTTTTCTAAAAAGAAAGTTCTTCAATTAGCAGAT
TATTATGGAGATTTAGGTATAAAAACCAGTGTAATATATGGAAATCTTCCACCAGAGGTTAGAAAAAAACAATATGAACA
ATTTATGAGTGGAGATACTAATATATTAATAACTACAGATGCTATAGGTATGGGAGTAAATCTTCCTATAAGAAGAATAG
TATTTATGGATATTAGAAAATTTGATGGAAATGATATGAGATATTTAACTTCTCAAGAGATTAAACAAATAGGTGGAAGA
GCTGGAAGACTTGGTATATATGATATAGGTTATTTAGCATCTTATGGAAACACTCAAAATTTTGTAAAGGAAATGATAGA
AGTATACGATAGAAAAATATATGAAGCTGTAATAGAACCAAGTGAGGCTATATTAGATGTAAAAAGCCTTCCATTAAGGG
AAAAATTAGCTCTTTGGAGTACACGAGAAGAAAAAAGTTTATTATATAGAAAAATGGACATAGGAGAAAAAATTTTAGTG
CTAGATAGTATAAAAAATTATAAATTGCCAGAAAAATATCAGTGGCAATTATTAAAAGTACCCTTTGACGTTACTAATAT
AAATATAATGAATGCTTTTTTAAAATATGTAAATGAGATTTTTATAGGTAATTTTAAAAGTATATCTAAACCAAGACTTA
ATTCTAAAGATTTATATGATTTAGAATTATATTATCAAAAACTGAATTTATATTATTCATTATCTAAAAATTTTAATTTA
GATTTTGATGAAAGTTGGGTTTATGATGAAAGAACTAAGTTAAGTATAGAAATAAATAAAGTACTTAGAAAAAGATTTAG
TTTTTAA

Upstream 100 bases:

>100_bases
TCTCTAAAGCCAAGAACTCTGTTTATCTCATATTTTTTTATTCCTACTTTAAAATAAGGGGATTTTGATTATAATTAGGA
TATAAATTGGAGGAATTATT

Downstream 100 bases:

>100_bases
ACTTAAGAAAATATTCTTTTATATAAATTCTCATATTATTGTTTATTTAACAGCGTTAAAAATATATGTTTGTTTAAAAA
AATGATTTTGCCCTAATGTT

Product: helicase domain-containing protein

Products: NA

Alternate protein names: Helicase Domain Protein; Helicase; Helicase-Like; Helicase Conserved C-Terminal Domain Protein; ATP-Dependent Helicase; ATP-Dependent RNA Helicase; ATP-Dependent DNA Helicase; ATP-Dependent DNA Helicase Protein; MgpS ATP-Dependent Helicase; RNA Helicase; Superfamily II DNA/RNA Helicase; Helicase-Like Protein; Superfamily II DNA And RNA Helicase; ATP-Dependent RNA And DNA Helicase; ATP Dependent RNA Helicase; Adenosinetriphosphatase; RNA Helicase RhrA; ATP-Dependent Helicase MgpS; ATP-Dependent RNA Helicase Superfamily II; Helicase C-Terminal Domain Protein; DNA Helicase; ATP-Dependent DNA And RNA Helicase Protein

Number of amino acids: Translated: 588; Mature: 588

Protein sequence:

>588_residues
MKKASIDRNFRKIKNSYSQTEDIVQHSKINSLWEQEASIRKKLKKLESMKDKNIRDFKEVYNNYSHLLDYISKKLVKDYN
IKHNTNFDFHEIIKGNRKNYLKSGIMSVLITRHIPTMIFKEFDRIFPKNPKDEYKKVRHMNRKFYLHLGETNTGKTYNSM
ERLKESKKGIYLSPLRILALENFEKLNKEGIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDVAIIDEIQMIDDDQRG
SAWTRAILALRCKEIHVCGALNTKELIINIIEDCGDEYELKEYFRNIPLKIEEEAFKLKDIKKGDALVTFSKKKVLQLAD
YYGDLGIKTSVIYGNLPPEVRKKQYEQFMSGDTNILITTDAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTSQEIKQIGGR
AGRLGIYDIGYLASYGNTQNFVKEMIEVYDRKIYEAVIEPSEAILDVKSLPLREKLALWSTREEKSLLYRKMDIGEKILV
LDSIKNYKLPEKYQWQLLKVPFDVTNINIMNAFLKYVNEIFIGNFKSISKPRLNSKDLYDLELYYQKLNLYYSLSKNFNL
DFDESWVYDERTKLSIEINKVLRKRFSF

Sequences:

>Translated_588_residues
MKKASIDRNFRKIKNSYSQTEDIVQHSKINSLWEQEASIRKKLKKLESMKDKNIRDFKEVYNNYSHLLDYISKKLVKDYN
IKHNTNFDFHEIIKGNRKNYLKSGIMSVLITRHIPTMIFKEFDRIFPKNPKDEYKKVRHMNRKFYLHLGETNTGKTYNSM
ERLKESKKGIYLSPLRILALENFEKLNKEGIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDVAIIDEIQMIDDDQRG
SAWTRAILALRCKEIHVCGALNTKELIINIIEDCGDEYELKEYFRNIPLKIEEEAFKLKDIKKGDALVTFSKKKVLQLAD
YYGDLGIKTSVIYGNLPPEVRKKQYEQFMSGDTNILITTDAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTSQEIKQIGGR
AGRLGIYDIGYLASYGNTQNFVKEMIEVYDRKIYEAVIEPSEAILDVKSLPLREKLALWSTREEKSLLYRKMDIGEKILV
LDSIKNYKLPEKYQWQLLKVPFDVTNINIMNAFLKYVNEIFIGNFKSISKPRLNSKDLYDLELYYQKLNLYYSLSKNFNL
DFDESWVYDERTKLSIEINKVLRKRFSF
>Mature_588_residues
MKKASIDRNFRKIKNSYSQTEDIVQHSKINSLWEQEASIRKKLKKLESMKDKNIRDFKEVYNNYSHLLDYISKKLVKDYN
IKHNTNFDFHEIIKGNRKNYLKSGIMSVLITRHIPTMIFKEFDRIFPKNPKDEYKKVRHMNRKFYLHLGETNTGKTYNSM
ERLKESKKGIYLSPLRILALENFEKLNKEGIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDVAIIDEIQMIDDDQRG
SAWTRAILALRCKEIHVCGALNTKELIINIIEDCGDEYELKEYFRNIPLKIEEEAFKLKDIKKGDALVTFSKKKVLQLAD
YYGDLGIKTSVIYGNLPPEVRKKQYEQFMSGDTNILITTDAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTSQEIKQIGGR
AGRLGIYDIGYLASYGNTQNFVKEMIEVYDRKIYEAVIEPSEAILDVKSLPLREKLALWSTREEKSLLYRKMDIGEKILV
LDSIKNYKLPEKYQWQLLKVPFDVTNINIMNAFLKYVNEIFIGNFKSISKPRLNSKDLYDLELYYQKLNLYYSLSKNFNL
DFDESWVYDERTKLSIEINKVLRKRFSF

Specific function: Unknown

COG id: COG0513

COG function: function code LKJ; Superfamily II DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI31543667, Length=488, Percent_Identity=31.1475409836066, Blast_Score=233, Evalue=4e-61,
Organism=Caenorhabditis elegans, GI115532784, Length=463, Percent_Identity=31.1015118790497, Blast_Score=226, Evalue=2e-59,
Organism=Caenorhabditis elegans, GI115532782, Length=463, Percent_Identity=31.1015118790497, Blast_Score=226, Evalue=2e-59,
Organism=Saccharomyces cerevisiae, GI6325228, Length=342, Percent_Identity=38.8888888888889, Blast_Score=239, Evalue=1e-63,
Organism=Saccharomyces cerevisiae, GI6323430, Length=83, Percent_Identity=40.9638554216867, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221329989, Length=488, Percent_Identity=32.3770491803279, Blast_Score=228, Evalue=9e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 69369; Mature: 69369

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS00037 MYB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKASIDRNFRKIKNSYSQTEDIVQHSKINSLWEQEASIRKKLKKLESMKDKNIRDFKEV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
YNNYSHLLDYISKKLVKDYNIKHNTNFDFHEIIKGNRKNYLKSGIMSVLITRHIPTMIFK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
EFDRIFPKNPKDEYKKVRHMNRKFYLHLGETNTGKTYNSMERLKESKKGIYLSPLRILAL
HHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEECHHHHHHH
ENFEKLNKEGIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDVAIIDEIQMIDDDQRG
HHHHHHCCCCCEEEEECCHHHHHHHHHHHHEEEEEEECCCCCCCEEEEEHHHHCCCCCCC
SAWTRAILALRCKEIHVCGALNTKELIINIIEDCGDEYELKEYFRNIPLKIEEEAFKLKD
HHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCEECHHHHHHHH
IKKGDALVTFSKKKVLQLADYYGDLGIKTSVIYGNLPPEVRKKQYEQFMSGDTNILITTD
CCCCCEEEEECHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEC
AIGMGVNLPIRRIVFMDIRKFDGNDMRYLTSQEIKQIGGRAGRLGIYDIGYLASYGNTQN
CCCCCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCEEEEEHHHHHCCCCHHH
FVKEMIEVYDRKIYEAVIEPSEAILDVKSLPLREKLALWSTREEKSLLYRKMDIGEKILV
HHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCEEEE
LDSIKNYKLPEKYQWQLLKVPFDVTNINIMNAFLKYVNEIFIGNFKSISKPRLNSKDLYD
EECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
LELYYQKLNLYYSLSKNFNLDFDESWVYDERTKLSIEINKVLRKRFSF
HHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCC
>Mature Secondary Structure
MKKASIDRNFRKIKNSYSQTEDIVQHSKINSLWEQEASIRKKLKKLESMKDKNIRDFKEV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
YNNYSHLLDYISKKLVKDYNIKHNTNFDFHEIIKGNRKNYLKSGIMSVLITRHIPTMIFK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
EFDRIFPKNPKDEYKKVRHMNRKFYLHLGETNTGKTYNSMERLKESKKGIYLSPLRILAL
HHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEECHHHHHHH
ENFEKLNKEGIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDVAIIDEIQMIDDDQRG
HHHHHHCCCCCEEEEECCHHHHHHHHHHHHEEEEEEECCCCCCCEEEEEHHHHCCCCCCC
SAWTRAILALRCKEIHVCGALNTKELIINIIEDCGDEYELKEYFRNIPLKIEEEAFKLKD
HHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCEECHHHHHHHH
IKKGDALVTFSKKKVLQLADYYGDLGIKTSVIYGNLPPEVRKKQYEQFMSGDTNILITTD
CCCCCEEEEECHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEC
AIGMGVNLPIRRIVFMDIRKFDGNDMRYLTSQEIKQIGGRAGRLGIYDIGYLASYGNTQN
CCCCCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCEEEEEHHHHHCCCCHHH
FVKEMIEVYDRKIYEAVIEPSEAILDVKSLPLREKLALWSTREEKSLLYRKMDIGEKILV
HHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCEEEE
LDSIKNYKLPEKYQWQLLKVPFDVTNINIMNAFLKYVNEIFIGNFKSISKPRLNSKDLYD
EECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
LELYYQKLNLYYSLSKNFNLDFDESWVYDERTKLSIEINKVLRKRFSF
HHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA