| Definition | Clostridium botulinum A2 str. Kyoto chromosome, complete genome. |
|---|---|
| Accession | NC_012563 |
| Length | 4,155,278 |
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The map label for this gene is yejF [C]
Identifier: 226948638
GI number: 226948638
Start: 1593572
End: 1594366
Strand: Direct
Name: yejF [C]
Synonym: CLM_1533
Alternate gene names: 226948638
Gene position: 1593572-1594366 (Clockwise)
Preceding gene: 226948637
Following gene: 226948639
Centisome position: 38.35
GC content: 26.16
Gene sequence:
>795_bases TTGAATATTTTAGAAGTCAAAGGCCTTAGGATTGAAGAAGAAAAAAATAAAAAAATTTTAGTTGGGAATACTAATTTTGA AGTAGAAAAAGGAAAGATTACTTGTATAGTGGGGGAAAGTGGAAGTGGCAAAACTATTACAGCCATGTCCATAATAGGAA TGCTTCCACAAGGAGTTAGAGTTATAGAGGGAGAAATACTTTTTAACGGGGAAAATACTTTTAATTTCTCTAAAGAAAAA TTAAGAGATTTTAGAGGAAAGAAAATTTTTTCTATATTTCAAAATTCTATAAATTGTTTTAATCCCTCTGTAATTATGGA AACACAAATATACAATATGATATGTAGTCATTATAGTATAGATAAGGAAAATTTTAAAAATAAACTTATAAATATAATGA AAAATATTAATTTGAAAAATCCTGAAATCATATTAAAACAGTATCCTTTTCAATTAAGTGGAGGTATGCTTCAAAGGATG ATGATTGCATCAGCTATACTTATGGAACCAGATATAATAATAGCAGATGAACCAACTACTGCCTTGGATTTAACATCTCA AAAAGATATACTAAATCAATTGAAAATGATAAAAGAAAAATTGAATACTACTATATTAATGATAACTCATGATTTTGGAG TAGTAGCGGAAATTGCAGATAATGTGATAATTATGCAAAATGGAAATATTATAGAAAAGGGAAATGTATATAATATATTT GATAATCCTCAAGAAAATTATACTAGAACTTTAATAAATGCTACCTTTAAAAGAGAGGTAACTTATGTATGTTAG
Upstream 100 bases:
>100_bases AGGGAGAAATTTAATTTTATAAATATATAGTCATTAAACAAGTTTTACAGGTTAAAAGATTTTTGCAAATCATTCATTTA GCCTTTTAGGAGGAAATAGT
Downstream 100 bases:
>100_bases AAGTTAAAAATGTAGTAAAAAGCTATAATACTAAGTTAAGGTTATTTACAAAAAATAAATTAGATTTTAGAGCTATAGAT AATGTATCCTTTAAATTAAA
Product: peptide/opine/nickel uptake ABC transporter
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 264; Mature: 264
Protein sequence:
>264_residues MNILEVKGLRIEEEKNKKILVGNTNFEVEKGKITCIVGESGSGKTITAMSIIGMLPQGVRVIEGEILFNGENTFNFSKEK LRDFRGKKIFSIFQNSINCFNPSVIMETQIYNMICSHYSIDKENFKNKLINIMKNINLKNPEIILKQYPFQLSGGMLQRM MIASAILMEPDIIIADEPTTALDLTSQKDILNQLKMIKEKLNTTILMITHDFGVVAEIADNVIIMQNGNIIEKGNVYNIF DNPQENYTRTLINATFKREVTYVC
Sequences:
>Translated_264_residues MNILEVKGLRIEEEKNKKILVGNTNFEVEKGKITCIVGESGSGKTITAMSIIGMLPQGVRVIEGEILFNGENTFNFSKEK LRDFRGKKIFSIFQNSINCFNPSVIMETQIYNMICSHYSIDKENFKNKLINIMKNINLKNPEIILKQYPFQLSGGMLQRM MIASAILMEPDIIIADEPTTALDLTSQKDILNQLKMIKEKLNTTILMITHDFGVVAEIADNVIIMQNGNIIEKGNVYNIF DNPQENYTRTLINATFKREVTYVC >Mature_264_residues MNILEVKGLRIEEEKNKKILVGNTNFEVEKGKITCIVGESGSGKTITAMSIIGMLPQGVRVIEGEILFNGENTFNFSKEK LRDFRGKKIFSIFQNSINCFNPSVIMETQIYNMICSHYSIDKENFKNKLINIMKNINLKNPEIILKQYPFQLSGGMLQRM MIASAILMEPDIIIADEPTTALDLTSQKDILNQLKMIKEKLNTTILMITHDFGVVAEIADNVIIMQNGNIIEKGNVYNIF DNPQENYTRTLINATFKREVTYVC
Specific function: Probably part of a binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42490749, Length=246, Percent_Identity=30.0813008130081, Blast_Score=91, Evalue=8e-19, Organism=Homo sapiens, GI148612844, Length=222, Percent_Identity=29.7297297297297, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI255708477, Length=222, Percent_Identity=29.7297297297297, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI11967969, Length=232, Percent_Identity=25, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI4505771, Length=226, Percent_Identity=30.0884955752212, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI9961250, Length=226, Percent_Identity=30.0884955752212, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI9961252, Length=226, Percent_Identity=30.0884955752212, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI9955968, Length=219, Percent_Identity=24.6575342465753, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI9955966, Length=217, Percent_Identity=26.7281105990783, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI45243524, Length=217, Percent_Identity=26.7281105990783, Blast_Score=65, Evalue=4e-11, Organism=Escherichia coli, GI1788506, Length=244, Percent_Identity=37.2950819672131, Blast_Score=195, Evalue=3e-51, Organism=Escherichia coli, GI1789890, Length=240, Percent_Identity=40.4166666666667, Blast_Score=191, Evalue=3e-50, Organism=Escherichia coli, GI1787759, Length=239, Percent_Identity=37.2384937238494, Blast_Score=186, Evalue=1e-48, Organism=Escherichia coli, GI1789963, Length=256, Percent_Identity=35.9375, Blast_Score=184, Evalue=7e-48, Organism=Escherichia coli, GI145693107, Length=261, Percent_Identity=36.7816091954023, Blast_Score=183, Evalue=1e-47, Organism=Escherichia coli, GI48994883, Length=254, Percent_Identity=37.4015748031496, Blast_Score=174, Evalue=6e-45, Organism=Escherichia coli, GI1789962, Length=235, Percent_Identity=33.1914893617021, Blast_Score=145, Evalue=2e-36, Organism=Escherichia coli, GI1787500, Length=235, Percent_Identity=31.063829787234, Blast_Score=136, Evalue=2e-33, Organism=Escherichia coli, GI1787548, Length=261, Percent_Identity=28.3524904214559, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1789032, Length=231, Percent_Identity=30.7359307359307, Blast_Score=124, Evalue=9e-30, Organism=Escherichia coli, GI1788225, Length=255, Percent_Identity=29.8039215686275, Blast_Score=117, Evalue=5e-28, Organism=Escherichia coli, GI1786398, Length=241, Percent_Identity=30.2904564315353, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1787758, Length=233, Percent_Identity=28.3261802575107, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI48994997, Length=236, Percent_Identity=26.6949152542373, Blast_Score=114, Evalue=6e-27, Organism=Escherichia coli, GI1787547, Length=238, Percent_Identity=26.890756302521, Blast_Score=114, Evalue=7e-27, Organism=Escherichia coli, GI1789891, Length=210, Percent_Identity=29.5238095238095, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI1788761, Length=227, Percent_Identity=27.3127753303965, Blast_Score=101, Evalue=4e-23, Organism=Escherichia coli, GI1788450, Length=231, Percent_Identity=26.4069264069264, Blast_Score=101, Evalue=4e-23, Organism=Escherichia coli, GI1787089, Length=228, Percent_Identity=28.0701754385965, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1789672, Length=233, Percent_Identity=28.3261802575107, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1786703, Length=235, Percent_Identity=29.3617021276596, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1788644, Length=206, Percent_Identity=26.6990291262136, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1787370, Length=229, Percent_Identity=24.8908296943231, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI87081709, Length=243, Percent_Identity=23.0452674897119, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1789586, Length=237, Percent_Identity=28.2700421940928, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787143, Length=222, Percent_Identity=29.2792792792793, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI1786872, Length=218, Percent_Identity=28.4403669724771, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1787105, Length=208, Percent_Identity=27.8846153846154, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787712, Length=235, Percent_Identity=24.2553191489362, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1790162, Length=240, Percent_Identity=26.25, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787112, Length=235, Percent_Identity=26.3829787234043, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787029, Length=221, Percent_Identity=26.6968325791855, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI87082267, Length=233, Percent_Identity=25.3218884120172, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1789873, Length=224, Percent_Identity=26.3392857142857, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI87081834, Length=224, Percent_Identity=26.7857142857143, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786319, Length=208, Percent_Identity=26.4423076923077, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1790467, Length=232, Percent_Identity=22.4137931034483, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786803, Length=233, Percent_Identity=21.8884120171674, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI87081791, Length=234, Percent_Identity=23.0769230769231, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1787113, Length=222, Percent_Identity=27.027027027027, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786653, Length=216, Percent_Identity=25, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI48994943, Length=227, Percent_Identity=23.3480176211454, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1786981, Length=234, Percent_Identity=25.6410256410256, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1790544, Length=249, Percent_Identity=21.6867469879518, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1786698, Length=207, Percent_Identity=25.6038647342995, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1787972, Length=242, Percent_Identity=26.0330578512397, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1790739, Length=246, Percent_Identity=23.5772357723577, Blast_Score=61, Evalue=6e-11, Organism=Escherichia coli, GI87081782, Length=215, Percent_Identity=25.1162790697674, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI212646699, Length=249, Percent_Identity=26.9076305220884, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI193211017, Length=227, Percent_Identity=27.7533039647577, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI193211015, Length=227, Percent_Identity=27.7533039647577, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71996809, Length=227, Percent_Identity=28.1938325991189, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI25146777, Length=226, Percent_Identity=30.0884955752212, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI193208177, Length=252, Percent_Identity=25.7936507936508, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI71996550, Length=229, Percent_Identity=30.1310043668122, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17541710, Length=214, Percent_Identity=30.8411214953271, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193202349, Length=228, Percent_Identity=28.9473684210526, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17567265, Length=241, Percent_Identity=27.8008298755187, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI115534520, Length=225, Percent_Identity=28, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71992285, Length=236, Percent_Identity=27.9661016949153, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17567269, Length=235, Percent_Identity=27.6595744680851, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI115535101, Length=233, Percent_Identity=27.4678111587983, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17558664, Length=228, Percent_Identity=27.6315789473684, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71984940, Length=225, Percent_Identity=28.4444444444444, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71983516, Length=207, Percent_Identity=23.6714975845411, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71983510, Length=207, Percent_Identity=23.6714975845411, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71983523, Length=207, Percent_Identity=23.6714975845411, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71992290, Length=235, Percent_Identity=27.2340425531915, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17569145, Length=221, Percent_Identity=28.9592760180996, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=228, Percent_Identity=27.1929824561404, Blast_Score=76, Evalue=6e-15, Organism=Saccharomyces cerevisiae, GI6324985, Length=237, Percent_Identity=25.7383966244726, Blast_Score=72, Evalue=9e-14, Organism=Saccharomyces cerevisiae, GI6323959, Length=232, Percent_Identity=25.4310344827586, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6323014, Length=241, Percent_Identity=24.0663900414938, Blast_Score=63, Evalue=5e-11, Organism=Drosophila melanogaster, GI21357907, Length=221, Percent_Identity=28.9592760180996, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI23397593, Length=232, Percent_Identity=28.0172413793103, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI85725262, Length=221, Percent_Identity=27.6018099547511, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24666092, Length=227, Percent_Identity=24.6696035242291, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI85726357, Length=222, Percent_Identity=26.1261261261261, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24650855, Length=222, Percent_Identity=26.1261261261261, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI281362751, Length=223, Percent_Identity=26.457399103139, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI281363262, Length=239, Percent_Identity=27.1966527196653, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24653245, Length=239, Percent_Identity=27.1966527196653, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 30017; Mature: 30017
Theoretical pI: Translated: 7.29; Mature: 7.29
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNILEVKGLRIEEEKNKKILVGNTNFEVEKGKITCIVGESGSGKTITAMSIIGMLPQGVR CCCEEECCEEEECCCCCEEEEECCCEEEECCEEEEEEECCCCCCEEHHHHHHHHCCCCCE VIEGEILFNGENTFNFSKEKLRDFRGKKIFSIFQNSINCFNPSVIMETQIYNMICSHYSI EEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHCCC DKENFKNKLINIMKNINLKNPEIILKQYPFQLSGGMLQRMMIASAILMEPDIIIADEPTT CHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCC ALDLTSQKDILNQLKMIKEKLNTTILMITHDFGVVAEIADNVIIMQNGNIIEKGNVYNIF EEECCCHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHCCEEEEECCCEEECCCEEEEC DNPQENYTRTLINATFKREVTYVC CCCHHHHHHHHHHHHHHCEEEECC >Mature Secondary Structure MNILEVKGLRIEEEKNKKILVGNTNFEVEKGKITCIVGESGSGKTITAMSIIGMLPQGVR CCCEEECCEEEECCCCCEEEEECCCEEEECCEEEEEEECCCCCCEEHHHHHHHHCCCCCE VIEGEILFNGENTFNFSKEKLRDFRGKKIFSIFQNSINCFNPSVIMETQIYNMICSHYSI EEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHCCC DKENFKNKLINIMKNINLKNPEIILKQYPFQLSGGMLQRMMIASAILMEPDIIIADEPTT CHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCC ALDLTSQKDILNQLKMIKEKLNTTILMITHDFGVVAEIADNVIIMQNGNIIEKGNVYNIF EEECCCHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHCCEEEEECCCEEECCCEEEEC DNPQENYTRTLINATFKREVTYVC CCCHHHHHHHHHHHHHHCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8796346; 9163424 [H]