Click here to switch to the map view.

The map label for this gene is ydaM [H]

Identifier: 226948565

GI number: 226948565

Start: 1510805

End: 1512067

Strand: Direct

Name: ydaM [H]

Synonym: CLM_1457

Alternate gene names: 226948565

Gene position: 1510805-1512067 (Clockwise)

Preceding gene: 226948564

Following gene: 226948566

Centisome position: 36.36

GC content: 26.05

Gene sequence:

>1263_bases
ATGGAAAGTTTAAATTGGGTAGATTATTTGTTCATTTTTTCTTTAGTTTCAATATGGATGCTGCTGTTTGTAAATATAAT
TTTATCTTTAGCTGGATATAGATATTATTTAAAGACTTTAAACAGTGAACTTAAAGGACTAGAGAATGAAAAATATCCTA
AGGTATCTATATTAGTACCTGCTCATAATGAGGAAAAGGTAATAGGAAGAACGGTAAAATCTATCTTGCTTTTAAATTAT
CCTAAAGATAAAATGGAGCTTATTGTTATAAATGATAATTCCTCAGATAACACTAAAAAAATACTAAAACAAATTCAAAA
AGAATACAGATCTTATAATTTTAAAATAATAAATACAGATAATATAACAGGAGGAAGGGGTAAGTCTAATGCTTTAAATA
TAGGCTATAAACATTCAAGTGGAGACTTTATAGCCGTATATGATGCAGATAATACTCCAGATAAAAATGCATTAAAATAT
CTTATGGAAACTATAATTGAGGACGAACATTTAGGAGCAGTTATAGGAAAGTTTAGAACTAGAAATAAAGACAGAAATAT
GTTAACAAGATTTATAAATATAGAGACCTTAAGTTTTCAATGGATGTGCCAAGCAGGAAGATGGAATTTATTAAATTTAT
GTACTATACCTGGCACTAATTTTGTAGTAAGAAAGAATATAATACAAAAGCTGAATGGATGGGATCCAAAAGCTATAGCA
GAAGATACAGAGATAAGTTTTAGAATATATGAGTTAGGATATAAGATAAAATTTGTACCATACTCTGTAACTTGGGAACA
GGAGCCAGAGAATTTAAAGGTTTGGTTTAAACAAAGAACTAGATGGGCTAAAGGTAATATTTATGTACTTTTAAAATATT
TTAAAAACATGTTTAAAGGAACTAGTAAAGATATAATATTTGATATTTTTTATTTTTTTTCAGTGTACTTTTTATTTTTA
TCCTCTGTAATAATATCTGATATTTTATTTATTGTTGGTATTTTTTTAAATATAAATTTACATGTTACAGGAAATTTTAA
TGTTCTTTGGATATTAGCCTATGTGCTTTTTGTTTTAGAAGTAAGTTTAACTCTAACATTAGAAAAAGGGGAAAGCAATA
AGGAAAATTTAATACTTGTACCTATTATGTATTTTACATATTGTCAAATGTGGATGATAGTTGCCCTTAGAGGAATAATT
CAATATATTCGGGATAAATTGTTTAAAAAAGAAATTAAATGGTACAAAACAGAAAGATTTTAA

Upstream 100 bases:

>100_bases
TTATAGTTATAATGATAGTTACTGTATTTGTTACTATATTTATCATTATGTTTTTTGTATCTAAGAAAAAGGATAAAAAT
AAATTTTTAAGGTGATAAAC

Downstream 100 bases:

>100_bases
AAAGAAAAATAAAAAACACATAGAAAAATTAATAAAAGAATTATCAATTATAAAATATGAGAGTATGAAATGGAATAAAT
AATATAAAAAGAAAGGTAGG

Product: group 2 family glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MESLNWVDYLFIFSLVSIWMLLFVNIILSLAGYRYYLKTLNSELKGLENEKYPKVSILVPAHNEEKVIGRTVKSILLLNY
PKDKMELIVINDNSSDNTKKILKQIQKEYRSYNFKIINTDNITGGRGKSNALNIGYKHSSGDFIAVYDADNTPDKNALKY
LMETIIEDEHLGAVIGKFRTRNKDRNMLTRFINIETLSFQWMCQAGRWNLLNLCTIPGTNFVVRKNIIQKLNGWDPKAIA
EDTEISFRIYELGYKIKFVPYSVTWEQEPENLKVWFKQRTRWAKGNIYVLLKYFKNMFKGTSKDIIFDIFYFFSVYFLFL
SSVIISDILFIVGIFLNINLHVTGNFNVLWILAYVLFVLEVSLTLTLEKGESNKENLILVPIMYFTYCQMWMIVALRGII
QYIRDKLFKKEIKWYKTERF

Sequences:

>Translated_420_residues
MESLNWVDYLFIFSLVSIWMLLFVNIILSLAGYRYYLKTLNSELKGLENEKYPKVSILVPAHNEEKVIGRTVKSILLLNY
PKDKMELIVINDNSSDNTKKILKQIQKEYRSYNFKIINTDNITGGRGKSNALNIGYKHSSGDFIAVYDADNTPDKNALKY
LMETIIEDEHLGAVIGKFRTRNKDRNMLTRFINIETLSFQWMCQAGRWNLLNLCTIPGTNFVVRKNIIQKLNGWDPKAIA
EDTEISFRIYELGYKIKFVPYSVTWEQEPENLKVWFKQRTRWAKGNIYVLLKYFKNMFKGTSKDIIFDIFYFFSVYFLFL
SSVIISDILFIVGIFLNINLHVTGNFNVLWILAYVLFVLEVSLTLTLEKGESNKENLILVPIMYFTYCQMWMIVALRGII
QYIRDKLFKKEIKWYKTERF
>Mature_420_residues
MESLNWVDYLFIFSLVSIWMLLFVNIILSLAGYRYYLKTLNSELKGLENEKYPKVSILVPAHNEEKVIGRTVKSILLLNY
PKDKMELIVINDNSSDNTKKILKQIQKEYRSYNFKIINTDNITGGRGKSNALNIGYKHSSGDFIAVYDADNTPDKNALKY
LMETIIEDEHLGAVIGKFRTRNKDRNMLTRFINIETLSFQWMCQAGRWNLLNLCTIPGTNFVVRKNIIQKLNGWDPKAIA
EDTEISFRIYELGYKIKFVPYSVTWEQEPENLKVWFKQRTRWAKGNIYVLLKYFKNMFKGTSKDIIFDIFYFFSVYFLFL
SSVIISDILFIVGIFLNINLHVTGNFNVLWILAYVLFVLEVSLTLTLEKGESNKENLILVPIMYFTYCQMWMIVALRGII
QYIRDKLFKKEIKWYKTERF

Specific function: Unknown

COG id: COG1215

COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis

Gene ontology:

Cell location: Membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787259, Length=373, Percent_Identity=25.201072386059, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI87082284, Length=364, Percent_Identity=24.1758241758242, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786560, Length=316, Percent_Identity=22.4683544303797, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 49474; Mature: 49474

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESLNWVDYLFIFSLVSIWMLLFVNIILSLAGYRYYLKTLNSELKGLENEKYPKVSILVP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
AHNEEKVIGRTVKSILLLNYPKDKMELIVINDNSSDNTKKILKQIQKEYRSYNFKIINTD
CCCCCHHHHHHHHHHHEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECC
NITGGRGKSNALNIGYKHSSGDFIAVYDADNTPDKNALKYLMETIIEDEHLGAVIGKFRT
CCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHC
RNKDRNMLTRFINIETLSFQWMCQAGRWNLLNLCTIPGTNFVVRKNIIQKLNGWDPKAIA
CCCCHHHHHHHEEEEEEEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCC
EDTEISFRIYELGYKIKFVPYSVTWEQEPENLKVWFKQRTRWAKGNIYVLLKYFKNMFKG
CCCCEEEEEEEECEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHCC
TSKDIIFDIFYFFSVYFLFLSSVIISDILFIVGIFLNINLHVTGNFNVLWILAYVLFVLE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHH
VSLTLTLEKGESNKENLILVPIMYFTYCQMWMIVALRGIIQYIRDKLFKKEIKWYKTERF
HHEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MESLNWVDYLFIFSLVSIWMLLFVNIILSLAGYRYYLKTLNSELKGLENEKYPKVSILVP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
AHNEEKVIGRTVKSILLLNYPKDKMELIVINDNSSDNTKKILKQIQKEYRSYNFKIINTD
CCCCCHHHHHHHHHHHEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECC
NITGGRGKSNALNIGYKHSSGDFIAVYDADNTPDKNALKYLMETIIEDEHLGAVIGKFRT
CCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHC
RNKDRNMLTRFINIETLSFQWMCQAGRWNLLNLCTIPGTNFVVRKNIIQKLNGWDPKAIA
CCCCHHHHHHHEEEEEEEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCC
EDTEISFRIYELGYKIKFVPYSVTWEQEPENLKVWFKQRTRWAKGNIYVLLKYFKNMFKG
CCCCEEEEEEEECEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHCC
TSKDIIFDIFYFFSVYFLFLSSVIISDILFIVGIFLNINLHVTGNFNVLWILAYVLFVLE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHH
VSLTLTLEKGESNKENLILVPIMYFTYCQMWMIVALRGIIQYIRDKLFKKEIKWYKTERF
HHEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]