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The map label for this gene is ydaK [H]

Identifier: 226948563

GI number: 226948563

Start: 1508309

End: 1509154

Strand: Direct

Name: ydaK [H]

Synonym: CLM_1455

Alternate gene names: 226948563

Gene position: 1508309-1509154 (Clockwise)

Preceding gene: 226948562

Following gene: 226948564

Centisome position: 36.3

GC content: 24.94

Gene sequence:

>846_bases
ATGGATAGATTCTCCAAGGACATAGATATATGCATAATTCTTTTGTTATTGAACTTTTTTTGTATATATAGTTTTATATA
TTTTAATTTAGGAAAAAATATTATGTTAAATTTTATAATGTTGGGTTCCTTATTTATGGTGACAATAGTAGCTTATTTCA
GAGGTATAGTTGAAGGTTTTTTATTTAGTGCTATGATTATATTTTTTTATGTTACTTTTATAATTTATAATAATACAATT
CATAGAAATCCGGTAGAACTCATTACTTATATCTGGATGGTAGACATACCTTTAAGTGCCTTTATATCCGGAAAACTATC
TGAAAATATAAATCTAATTCAAAGTATAAATACAAGGCTACAAAAGGAATATAGAGATTTAATAACCATTGATAAGACTA
CTGGTCTTAGCAATTTAAAAGGATTTTATATAGATTTGGATAGGGAAATGAGTAAAGCTAAAAGGCATAAATTGAATCTA
TCTCTTATGATAGTAAAAATACAGTACTATGATGAACTTAATGCTATTTTAGGAGAGAAAAAAATGGAAGAAATTTTAAA
GATTATAAGCAATGTTATAACCTTAGCAATTAGGGGAGAAGATATTAGCTATAAATTAAATAAAGATACTTTTGCAATAC
TTATGCCTAGTACAAATTTTCAAGGTGCTGAGGTGGTAAAAAACAGAATAAAGGAAAGTATTAGTGAAGAAAACCTGAAA
ATAAAACAAGAAGATAAAAATGTTAATATTGATATAAAAGTAGGAATAGTAGAATATAAAAATACTATAAAAGAAGCTTT
TGAGTTTAAAGAATTAGCAGAAAAGGAATTAGAATACGATGTATAA

Upstream 100 bases:

>100_bases
TAAGTCAATATTATGTTATAATATATGGAAAATATAGTAAATAAATATTATTTAAAAATATGAATAAATAATAAATTTTT
TCCTGGAGGGAAATAAGAAT

Downstream 100 bases:

>100_bases
GAAAATAACTATTTACTTTATGATATTTTTTTTACTATTCACAAATGCAAATTGTAAAGTTAAAGCAGCAGATAGTGATA
AAAAAGAAAAAGTTTTAATA

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MDRFSKDIDICIILLLLNFFCIYSFIYFNLGKNIMLNFIMLGSLFMVTIVAYFRGIVEGFLFSAMIIFFYVTFIIYNNTI
HRNPVELITYIWMVDIPLSAFISGKLSENINLIQSINTRLQKEYRDLITIDKTTGLSNLKGFYIDLDREMSKAKRHKLNL
SLMIVKIQYYDELNAILGEKKMEEILKIISNVITLAIRGEDISYKLNKDTFAILMPSTNFQGAEVVKNRIKESISEENLK
IKQEDKNVNIDIKVGIVEYKNTIKEAFEFKELAEKELEYDV

Sequences:

>Translated_281_residues
MDRFSKDIDICIILLLLNFFCIYSFIYFNLGKNIMLNFIMLGSLFMVTIVAYFRGIVEGFLFSAMIIFFYVTFIIYNNTI
HRNPVELITYIWMVDIPLSAFISGKLSENINLIQSINTRLQKEYRDLITIDKTTGLSNLKGFYIDLDREMSKAKRHKLNL
SLMIVKIQYYDELNAILGEKKMEEILKIISNVITLAIRGEDISYKLNKDTFAILMPSTNFQGAEVVKNRIKESISEENLK
IKQEDKNVNIDIKVGIVEYKNTIKEAFEFKELAEKELEYDV
>Mature_281_residues
MDRFSKDIDICIILLLLNFFCIYSFIYFNLGKNIMLNFIMLGSLFMVTIVAYFRGIVEGFLFSAMIIFFYVTFIIYNNTI
HRNPVELITYIWMVDIPLSAFISGKLSENINLIQSINTRLQKEYRDLITIDKTTGLSNLKGFYIDLDREMSKAKRHKLNL
SLMIVKIQYYDELNAILGEKKMEEILKIISNVITLAIRGEDISYKLNKDTFAILMPSTNFQGAEVVKNRIKESISEENLK
IKQEDKNVNIDIKVGIVEYKNTIKEAFEFKELAEKELEYDV

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 32785; Mature: 32785

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFSKDIDICIILLLLNFFCIYSFIYFNLGKNIMLNFIMLGSLFMVTIVAYFRGIVEGF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFSAMIIFFYVTFIIYNNTIHRNPVELITYIWMVDIPLSAFISGKLSENINLIQSINTRL
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHCHHHCCHHHHHHHHHHH
QKEYRDLITIDKTTGLSNLKGFYIDLDREMSKAKRHKLNLSLMIVKIQYYDELNAILGEK
HHHHHHHEEEECCCCCCCCCEEEEEECHHHHHHHHHHCCEEEEEEEEEHHHHHHHHHCHH
KMEEILKIISNVITLAIRGEDISYKLNKDTFAILMPSTNFQGAEVVKNRIKESISEENLK
HHHHHHHHHHHHHEEEEECCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCE
IKQEDKNVNIDIKVGIVEYKNTIKEAFEFKELAEKELEYDV
EEECCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDRFSKDIDICIILLLLNFFCIYSFIYFNLGKNIMLNFIMLGSLFMVTIVAYFRGIVEGF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFSAMIIFFYVTFIIYNNTIHRNPVELITYIWMVDIPLSAFISGKLSENINLIQSINTRL
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHCHHHCCHHHHHHHHHHH
QKEYRDLITIDKTTGLSNLKGFYIDLDREMSKAKRHKLNLSLMIVKIQYYDELNAILGEK
HHHHHHHEEEECCCCCCCCCEEEEEECHHHHHHHHHHCCEEEEEEEEEHHHHHHHHHCHH
KMEEILKIISNVITLAIRGEDISYKLNKDTFAILMPSTNFQGAEVVKNRIKESISEENLK
HHHHHHHHHHHHHEEEEECCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCE
IKQEDKNVNIDIKVGIVEYKNTIKEAFEFKELAEKELEYDV
EEECCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]