Click here to switch to the map view.

The map label for this gene is ydfS [H]

Identifier: 226948541

GI number: 226948541

Start: 1487562

End: 1488290

Strand: Direct

Name: ydfS [H]

Synonym: CLM_1433

Alternate gene names: 226948541

Gene position: 1487562-1488290 (Clockwise)

Preceding gene: 226948539

Following gene: 226948542

Centisome position: 35.8

GC content: 30.32

Gene sequence:

>729_bases
TTGAATGAAGCTTTAGTTGTGTTAGTTAGAGCTATAATAGGTTTTTTTACTCTTTTAATATTTGCAAGAATGTTAGGAAA
GCAACAAATAAGTCAGCTTACTTTTTTCGATTATGTGCTTGGCATAACTATAGGGTCTACGGCGTCTACATTAAGTACAG
ATTTAGAAAGTACAGCTTGGTCCCATTGGGTAGGACTTTTATCCTGGTGTGTTATAGGATTTTTACTGCAATGGATAACA
TTAAAGTGGAGATATGCAGCCAAATATATAGAGGGTGAGCCGACTATTGTAATAATGGATGGTAAAATAATGGAAGATAC
ATTAAGAAAAATGAGATATAGAGTATCAGATGTTTTAGAACAACTTAGAGGAAAAGACATTTTTGATTTATCAGAGATAG
AGTTTGCAATATTAGAATCTGATGGACAATTATCCGTACTAAAGAAACCAGAAGAAGAACCATTAACAGCTAAAGATCTA
AATATATTTAAGAGTAAAACAGGCATAAGCAGAGAACTTATATATGATGGAAAAATAGTAGAGGATAATCTAAGAGAAAT
AAATAGGGATAAAGAATGGCTAAAAGCTGAACTAAAAAAGAGAAATATTAAAGATTCATCAGAGGTTTTTTTCGCTACCA
TAAATGAAAATAATGAAATTTATATAGATACATATAAAGATCATCTAAAAAGAATAATAGACATAGGAGACTATAAAGGA
CCTTACTAA

Upstream 100 bases:

>100_bases
ATATGTTTTTAATACAATAGGATTAACTAAAATGTATAAATAAAAGTAAAAGGTAGAATACTATTATAGAAAAATTTTCT
ATAGGTAGGGAGTGTTGTAA

Downstream 100 bases:

>100_bases
TTGCTTTATCATATTTTATCATTTTCGTATTTAAATTTATTCCATTCAAGTATTATATTTATCTAAATATTAATTTTAAT
TAAGTAATAAAAGTATTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MNEALVVLVRAIIGFFTLLIFARMLGKQQISQLTFFDYVLGITIGSTASTLSTDLESTAWSHWVGLLSWCVIGFLLQWIT
LKWRYAAKYIEGEPTIVIMDGKIMEDTLRKMRYRVSDVLEQLRGKDIFDLSEIEFAILESDGQLSVLKKPEEEPLTAKDL
NIFKSKTGISRELIYDGKIVEDNLREINRDKEWLKAELKKRNIKDSSEVFFATINENNEIYIDTYKDHLKRIIDIGDYKG
PY

Sequences:

>Translated_242_residues
MNEALVVLVRAIIGFFTLLIFARMLGKQQISQLTFFDYVLGITIGSTASTLSTDLESTAWSHWVGLLSWCVIGFLLQWIT
LKWRYAAKYIEGEPTIVIMDGKIMEDTLRKMRYRVSDVLEQLRGKDIFDLSEIEFAILESDGQLSVLKKPEEEPLTAKDL
NIFKSKTGISRELIYDGKIVEDNLREINRDKEWLKAELKKRNIKDSSEVFFATINENNEIYIDTYKDHLKRIIDIGDYKG
PY
>Mature_242_residues
MNEALVVLVRAIIGFFTLLIFARMLGKQQISQLTFFDYVLGITIGSTASTLSTDLESTAWSHWVGLLSWCVIGFLLQWIT
LKWRYAAKYIEGEPTIVIMDGKIMEDTLRKMRYRVSDVLEQLRGKDIFDLSEIEFAILESDGQLSVLKKPEEEPLTAKDL
NIFKSKTGISRELIYDGKIVEDNLREINRDKEWLKAELKKRNIKDSSEVFFATINENNEIYIDTYKDHLKRIIDIGDYKG
PY

Specific function: Unknown

COG id: COG2323

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0702 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007353
- InterPro:   IPR023090 [H]

Pfam domain/function: PF04239 DUF421 [H]

EC number: NA

Molecular weight: Translated: 28019; Mature: 28019

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEALVVLVRAIIGFFTLLIFARMLGKQQISQLTFFDYVLGITIGSTASTLSTDLESTAW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
SHWVGLLSWCVIGFLLQWITLKWRYAAKYIEGEPTIVIMDGKIMEDTLRKMRYRVSDVLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCHHHHHHHHHHHHHHHHHH
QLRGKDIFDLSEIEFAILESDGQLSVLKKPEEEPLTAKDLNIFKSKTGISRELIYDGKIV
HHCCCCCCCHHHHEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCHHHEECCEEE
EDNLREINRDKEWLKAELKKRNIKDSSEVFFATINENNEIYIDTYKDHLKRIIDIGDYKG
HHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEHHHHHHHHHHHCCCCCC
PY
CC
>Mature Secondary Structure
MNEALVVLVRAIIGFFTLLIFARMLGKQQISQLTFFDYVLGITIGSTASTLSTDLESTAW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
SHWVGLLSWCVIGFLLQWITLKWRYAAKYIEGEPTIVIMDGKIMEDTLRKMRYRVSDVLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCHHHHHHHHHHHHHHHHHH
QLRGKDIFDLSEIEFAILESDGQLSVLKKPEEEPLTAKDLNIFKSKTGISRELIYDGKIV
HHCCCCCCCHHHHEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCHHHEECCEEE
EDNLREINRDKEWLKAELKKRNIKDSSEVFFATINENNEIYIDTYKDHLKRIIDIGDYKG
HHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEHHHHHHHHHHHCCCCCC
PY
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]