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The map label for this gene is farR [C]

Identifier: 226948404

GI number: 226948404

Start: 1348782

End: 1349408

Strand: Direct

Name: farR [C]

Synonym: CLM_1288

Alternate gene names: 226948404

Gene position: 1348782-1349408 (Clockwise)

Preceding gene: 226948402

Following gene: 226948405

Centisome position: 32.46

GC content: 27.27

Gene sequence:

>627_bases
ATGGAAAATACAGATACTCCCAAATATATAAAAATAGCAATAGATATAGCTCAAAAGATTTATAACAATGAATTTAAGGT
AGGGGAAAAAGTTAGAGGAAGATCCACACTTTCTAGTAAATATAATGTATCTCCAGAAACTATAAGAAGAGCTGTTTCAT
TGCTTAAGGATATGCAGGTAGTAGAGGTTACAGAAAAAAGTGGAATATATATTAAATCTGTTGAAAATGCATATTTGTTT
ATACATAGATTTAATGCTAAAAATAATGTTAAAGAACTTAGACAAAAAATAAAATCTCTCCAAAAGGAAAAGATTAAAAT
TGAAAAGGAAATAGATAAATATATAGACTTAATCTTGGAAAATTCTATTCAATTTGAGAATATAAACTTAGAGGATTCTT
ACGAAATGGTAATATATCCAAATTCTTATATAGTAAATAGAACTATTTCTGATACAGAGTTTTGGAAGCATACTAATGGT
ACTATAATATCTGTAAAAAGAAAGGATAAGATGTATATATCCCCAGGACCTCATTTCCGATTTAAAACAGGGGATATTGT
AAGAATCATATGTAGTGAAGATGATTTAAATAGAGCCCAAAGTTATATACAGCAGGGAGTAAATTAA

Upstream 100 bases:

>100_bases
GCATGCTGACTTTTACTCTATTTTATAGAAGATGGAGCTTATAGATAGCAGGTGAATTTTTTAATATAATTCAAATAATA
GGAACATAAGGAGAAGGATT

Downstream 100 bases:

>100_bases
GACTATTTTTAAGTATTCAATTTGACTTTTAAGTATAAATTGGTTTTATAGTAATATATAATATAAAATAGTAAGTAAAA
AATATTTATAGAATTTTTAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; TrkA Domain-Containing Protein; Regulatory Protein; Transcriptional Repressor BusR; TrkA-C Domain Protein; GntR Family Regulatory Protein; Regulatory Protein GntR HTH; TrkA-C Domain-Containing Protein; Fused Transcriptional Regulator/Membrane Protein; GntR Family Transcription Regulator; Gntr-Family Transcriptional Regulator

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MENTDTPKYIKIAIDIAQKIYNNEFKVGEKVRGRSTLSSKYNVSPETIRRAVSLLKDMQVVEVTEKSGIYIKSVENAYLF
IHRFNAKNNVKELRQKIKSLQKEKIKIEKEIDKYIDLILENSIQFENINLEDSYEMVIYPNSYIVNRTISDTEFWKHTNG
TIISVKRKDKMYISPGPHFRFKTGDIVRIICSEDDLNRAQSYIQQGVN

Sequences:

>Translated_208_residues
MENTDTPKYIKIAIDIAQKIYNNEFKVGEKVRGRSTLSSKYNVSPETIRRAVSLLKDMQVVEVTEKSGIYIKSVENAYLF
IHRFNAKNNVKELRQKIKSLQKEKIKIEKEIDKYIDLILENSIQFENINLEDSYEMVIYPNSYIVNRTISDTEFWKHTNG
TIISVKRKDKMYISPGPHFRFKTGDIVRIICSEDDLNRAQSYIQQGVN
>Mature_208_residues
MENTDTPKYIKIAIDIAQKIYNNEFKVGEKVRGRSTLSSKYNVSPETIRRAVSLLKDMQVVEVTEKSGIYIKSVENAYLF
IHRFNAKNNVKELRQKIKSLQKEKIKIEKEIDKYIDLILENSIQFENINLEDSYEMVIYPNSYIVNRTISDTEFWKHTNG
TIISVKRKDKMYISPGPHFRFKTGDIVRIICSEDDLNRAQSYIQQGVN

Specific function: Possible Transcriptional Regulator Of The Succinyl-CoA- Synthetase Operon. Binds Specifically To The Farr Promoter And Exhibits Weak Binding To The Citrate Synthase And Lipoamide Dehydrogenase Promoters. Binding At The Farr Promoter Is Abolished By Long-

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24337; Mature: 24337

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENTDTPKYIKIAIDIAQKIYNNEFKVGEKVRGRSTLSSKYNVSPETIRRAVSLLKDMQV
CCCCCCCCEEEEHHHHHHHHHCCCCCCCCHHCCCHHCCCCCCCCHHHHHHHHHHHHCCHH
VEVTEKSGIYIKSVENAYLFIHRFNAKNNVKELRQKIKSLQKEKIKIEKEIDKYIDLILE
EEEECCCCEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NSIQFENINLEDSYEMVIYPNSYIVNRTISDTEFWKHTNGTIISVKRKDKMYISPGPHFR
CCEEEEECCCCCCEEEEEECCCEEEECCCCCHHHEECCCCEEEEEEECCEEEECCCCCEE
FKTGDIVRIICSEDDLNRAQSYIQQGVN
EECCCEEEEEECCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MENTDTPKYIKIAIDIAQKIYNNEFKVGEKVRGRSTLSSKYNVSPETIRRAVSLLKDMQV
CCCCCCCCEEEEHHHHHHHHHCCCCCCCCHHCCCHHCCCCCCCCHHHHHHHHHHHHCCHH
VEVTEKSGIYIKSVENAYLFIHRFNAKNNVKELRQKIKSLQKEKIKIEKEIDKYIDLILE
EEEECCCCEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NSIQFENINLEDSYEMVIYPNSYIVNRTISDTEFWKHTNGTIISVKRKDKMYISPGPHFR
CCEEEEECCCCCCEEEEEECCCEEEECCCCCHHHEECCCCEEEEEEECCEEEECCCCCEE
FKTGDIVRIICSEDDLNRAQSYIQQGVN
EECCCEEEEEECCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA