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The map label for this gene is 226948373

Identifier: 226948373

GI number: 226948373

Start: 1309919

End: 1310563

Strand: Direct

Name: 226948373

Synonym: CLM_1256

Alternate gene names: NA

Gene position: 1309919-1310563 (Clockwise)

Preceding gene: 226948372

Following gene: 226948374

Centisome position: 31.52

GC content: 27.75

Gene sequence:

>645_bases
ATGAATACTAGAGATGAAATTAATAAAGATATACAAAAAGTGTTTAAAGATATAGATGAGCATATTTTAAAGGATGAGAA
ACCTTCTAATTATATAAATAAATTATATGAAGAAGGAAAATTAGAGGAATATCCTTTTGATATGATTACAATCTTAAGAA
AAATAGATCAGTCACCTAAATATCATCCAGAGGGAAGCGTTTGGAATCATATTATGATGGTTTTAGATAATGGAGCTAAG
GAAAGAGATAAAAGTGAAAATAAAAGAATATTTATGTGGGCATGTCTTTTGCATGATATAGGTAAGGGAACTACTACAAA
GATTAGAAAAGGGAGAATAACTTCCTATAATCATGATAAAGAAGGAGAGAGATTAAGCATAAAATTTTTAAAATGCTTTA
CGGAGGATGAGGAATTTATAAAGGAAGTTTCTAAATTAGTAAGATGGCATATGCAACCTCTTTTTGTTAATAAAAATTTG
CCTTTTAAAGATATAGAATCTATGGTGAAAGAAGTTTCTATTAAAGAAATAGCTCTAATTTCTTTATGTGATAGATTGGG
AAGGGGAGGTATGTCAGAAGGAAAAAAAGAAGAGGAAATTAAAGCAATAGATTTATTTATAGAGAAATGCTCCAATTATA
TGTAA

Upstream 100 bases:

>100_bases
TTAATGTAATTTAAAATAGAAGTTATAAATTAATTAATATGATATGAGATGAAATTTTAATGAAAAACCTAAAGAATAAG
TGTGAGTATAGGAGGACTTT

Downstream 100 bases:

>100_bases
TAATATTTTCATTTGCATTATAATAATATATATGATGTAAAGAAGGGAAATAAATATGGAGAATATAAGAAATATATTGG
AAAAACAGAAGAGTTTTTTT

Product: HD domain-containing protein

Products: NA

Alternate protein names: HD Superfamily Hydrolase; Poly A Polymerase; Polynucleotide Adenylyltransferase Region; Metal Dependent Phophohydrolase; HD Domain-Containing Protein; PolyA Polymerase-Like Protein; HD Domain Protein; tRNA Nucleotidyltransferase/Poly(A) Polymerase; PolyA Polymerase Related Protein

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MNTRDEINKDIQKVFKDIDEHILKDEKPSNYINKLYEEGKLEEYPFDMITILRKIDQSPKYHPEGSVWNHIMMVLDNGAK
ERDKSENKRIFMWACLLHDIGKGTTTKIRKGRITSYNHDKEGERLSIKFLKCFTEDEEFIKEVSKLVRWHMQPLFVNKNL
PFKDIESMVKEVSIKEIALISLCDRLGRGGMSEGKKEEEIKAIDLFIEKCSNYM

Sequences:

>Translated_214_residues
MNTRDEINKDIQKVFKDIDEHILKDEKPSNYINKLYEEGKLEEYPFDMITILRKIDQSPKYHPEGSVWNHIMMVLDNGAK
ERDKSENKRIFMWACLLHDIGKGTTTKIRKGRITSYNHDKEGERLSIKFLKCFTEDEEFIKEVSKLVRWHMQPLFVNKNL
PFKDIESMVKEVSIKEIALISLCDRLGRGGMSEGKKEEEIKAIDLFIEKCSNYM
>Mature_214_residues
MNTRDEINKDIQKVFKDIDEHILKDEKPSNYINKLYEEGKLEEYPFDMITILRKIDQSPKYHPEGSVWNHIMMVLDNGAK
ERDKSENKRIFMWACLLHDIGKGTTTKIRKGRITSYNHDKEGERLSIKFLKCFTEDEEFIKEVSKLVRWHMQPLFVNKNL
PFKDIESMVKEVSIKEIALISLCDRLGRGGMSEGKKEEEIKAIDLFIEKCSNYM

Specific function: Unknown

COG id: COG0617

COG function: function code J; tRNA nucleotidyltransferase/poly(A) polymerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25253; Mature: 25253

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTRDEINKDIQKVFKDIDEHILKDEKPSNYINKLYEEGKLEEYPFDMITILRKIDQSPK
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCC
YHPEGSVWNHIMMVLDNGAKERDKSENKRIFMWACLLHDIGKGTTTKIRKGRITSYNHDK
CCCCCHHHHHHHHHHHCCCHHCCCCCCCEEHHHHHHHHHHCCCCCHHHHCCCCCCCCCCC
EGERLSIKFLKCFTEDEEFIKEVSKLVRWHMQPLFVNKNLPFKDIESMVKEVSIKEIALI
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHHHHHHHH
SLCDRLGRGGMSEGKKEEEIKAIDLFIEKCSNYM
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNTRDEINKDIQKVFKDIDEHILKDEKPSNYINKLYEEGKLEEYPFDMITILRKIDQSPK
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCC
YHPEGSVWNHIMMVLDNGAKERDKSENKRIFMWACLLHDIGKGTTTKIRKGRITSYNHDK
CCCCCHHHHHHHHHHHCCCHHCCCCCCCEEHHHHHHHHHHCCCCCHHHHCCCCCCCCCCC
EGERLSIKFLKCFTEDEEFIKEVSKLVRWHMQPLFVNKNLPFKDIESMVKEVSIKEIALI
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHHHHHHHH
SLCDRLGRGGMSEGKKEEEIKAIDLFIEKCSNYM
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA