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The map label for this gene is rfbU [H]

Identifier: 226947336

GI number: 226947336

Start: 143051

End: 144178

Strand: Reverse

Name: rfbU [H]

Synonym: CLM_0156

Alternate gene names: 226947336

Gene position: 144178-143051 (Counterclockwise)

Preceding gene: 226947350

Following gene: 226947331

Centisome position: 3.47

GC content: 26.95

Gene sequence:

>1128_bases
ATGCGCATAGGTATTGATGGAAGACCTGCTTATTGGTATAGAGGCACTGGAATAGGCACTTACACTTACCAATTAATAAG
TTCTCTAAATAAAGTCGATAAAAAAAATGATTATTTAATTTTTAACCCTGAATTCTCAAATTCTCCTTTAAAATTAAACA
ATAATTTCAATATAAAGAATATAAATGCTCATTCTCCAAAAAATTTTTGGAATGAGGTAAATATACCTGCAATATTAAAA
AATAATAGTATGGACATTTATCACGTGCCCCAAAATGGTGTTGGGCTTCCTAAAAATAAAAATTGTAAATTTATAATAAC
ATTACATGATGTAATTCCTTATAGAATGCCAGAAACTGTAAGCGATAGATATTTAAAAATATTTTCAGAAGAAATACCTA
AAATAGTTTCTTCTGCTGATGGTATAATAACAGTTTCTGATTTTTCAAAGAAAGATATCATGAAATCTTTTAACTATCCT
GAAGACAAAATTTTTGTAACTCATTTAGCTAGTGAAGATATATATATGCCCTTAAATAAAGAGTTTTGTAGAAATATATT
AAAAATGAAATATAACATAAATAAAAATTTTATTTTATATGTAGGTGGATTTAGTCCTAGAAAAAATATATTAGGACTAA
TTGATGCATTTTATAACCTTATAAACATATATAAAAAAGATATTTCCTTAGTTATAGTCGGAAGAAAAGGTAAAATATAC
GAGAAATATATAGAACGAGTTCGTGAGTTAAATATGGAAGATAAAGTATTTTTCCCTGGATTTATATCCGTTAAAGATTT
ACCTTACTTTTATAATTGTGCTGAGATATTTGTATATCCATCCTTTTATGAAGGTTTTGGATTACCACCTATAGAAGCTA
TGGCTTGTGGTACTCCAGTAATAACATCTAATGTAACATCTATACCAGAAATAACAAAAGATGCAGCAATGTTAATAAAT
CCATATGATACTGATAGCATATGTAAAGCTATGTATACTGCATTATCTAATGAAAACATGAAAAACATATTAATAAAACG
AGGCTTAAATAGGACCTCCCAACTTACTTGGAATAATTGCGCTAAAAGCACTTTATTAGCCTATAAAAAAATACTATGCT
CTAATTAG

Upstream 100 bases:

>100_bases
TAAAACTATATGTATATTATTATAGTTTTAGAAGTAATTTAACACTTTTCTCTTTAAATTAATATAATGAATTATGATGA
ATTAAGAAAGGAAAATTTTT

Downstream 100 bases:

>100_bases
ACTCCAGTCTCCCCTTAACTGGAGTCTTAAATAATTTTTAGTTATAAAATTTGTAATTATCTGTATATCATATAAAAGTT
CATCTAAAATTTTAAAAAAC

Product: group 1 glycosyl transferase family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MRIGIDGRPAYWYRGTGIGTYTYQLISSLNKVDKKNDYLIFNPEFSNSPLKLNNNFNIKNINAHSPKNFWNEVNIPAILK
NNSMDIYHVPQNGVGLPKNKNCKFIITLHDVIPYRMPETVSDRYLKIFSEEIPKIVSSADGIITVSDFSKKDIMKSFNYP
EDKIFVTHLASEDIYMPLNKEFCRNILKMKYNINKNFILYVGGFSPRKNILGLIDAFYNLINIYKKDISLVIVGRKGKIY
EKYIERVRELNMEDKVFFPGFISVKDLPYFYNCAEIFVYPSFYEGFGLPPIEAMACGTPVITSNVTSIPEITKDAAMLIN
PYDTDSICKAMYTALSNENMKNILIKRGLNRTSQLTWNNCAKSTLLAYKKILCSN

Sequences:

>Translated_375_residues
MRIGIDGRPAYWYRGTGIGTYTYQLISSLNKVDKKNDYLIFNPEFSNSPLKLNNNFNIKNINAHSPKNFWNEVNIPAILK
NNSMDIYHVPQNGVGLPKNKNCKFIITLHDVIPYRMPETVSDRYLKIFSEEIPKIVSSADGIITVSDFSKKDIMKSFNYP
EDKIFVTHLASEDIYMPLNKEFCRNILKMKYNINKNFILYVGGFSPRKNILGLIDAFYNLINIYKKDISLVIVGRKGKIY
EKYIERVRELNMEDKVFFPGFISVKDLPYFYNCAEIFVYPSFYEGFGLPPIEAMACGTPVITSNVTSIPEITKDAAMLIN
PYDTDSICKAMYTALSNENMKNILIKRGLNRTSQLTWNNCAKSTLLAYKKILCSN
>Mature_375_residues
MRIGIDGRPAYWYRGTGIGTYTYQLISSLNKVDKKNDYLIFNPEFSNSPLKLNNNFNIKNINAHSPKNFWNEVNIPAILK
NNSMDIYHVPQNGVGLPKNKNCKFIITLHDVIPYRMPETVSDRYLKIFSEEIPKIVSSADGIITVSDFSKKDIMKSFNYP
EDKIFVTHLASEDIYMPLNKEFCRNILKMKYNINKNFILYVGGFSPRKNILGLIDAFYNLINIYKKDISLVIVGRKGKIY
EKYIERVRELNMEDKVFFPGFISVKDLPYFYNCAEIFVYPSFYEGFGLPPIEAMACGTPVITSNVTSIPEITKDAAMLIN
PYDTDSICKAMYTALSNENMKNILIKRGLNRTSQLTWNNCAKSTLLAYKKILCSN

Specific function: Involved In The Addition Of The First Glucose Residue To The Lipopolysaccharide Core. [C]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 43081; Mature: 43081

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIGIDGRPAYWYRGTGIGTYTYQLISSLNKVDKKNDYLIFNPEFSNSPLKLNNNFNIKN
CEECCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEECCCCCEEE
INAHSPKNFWNEVNIPAILKNNSMDIYHVPQNGVGLPKNKNCKFIITLHDVIPYRMPETV
CCCCCCHHHHCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCEEEEEEHHCCCCCCCCHH
SDRYLKIFSEEIPKIVSSADGIITVSDFSKKDIMKSFNYPEDKIFVTHLASEDIYMPLNK
HHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCEEEEEEECCCCEEECCCH
EFCRNILKMKYNINKNFILYVGGFSPRKNILGLIDAFYNLINIYKKDISLVIVGRKGKIY
HHHHHHHHHEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHH
EKYIERVRELNMEDKVFFPGFISVKDLPYFYNCAEIFVYPSFYEGFGLPPIEAMACGTPV
HHHHHHHHHCCCCCCEECCCEEEEECCCCEECEEEEEEECCHHCCCCCCCHHHHHCCCCE
ITSNVTSIPEITKDAAMLINPYDTDSICKAMYTALSNENMKNILIKRGLNRTSQLTWNNC
EECCCCCCCHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHH
AKSTLLAYKKILCSN
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MRIGIDGRPAYWYRGTGIGTYTYQLISSLNKVDKKNDYLIFNPEFSNSPLKLNNNFNIKN
CEECCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEECCCCCEEE
INAHSPKNFWNEVNIPAILKNNSMDIYHVPQNGVGLPKNKNCKFIITLHDVIPYRMPETV
CCCCCCHHHHCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCEEEEEEHHCCCCCCCCHH
SDRYLKIFSEEIPKIVSSADGIITVSDFSKKDIMKSFNYPEDKIFVTHLASEDIYMPLNK
HHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCEEEEEEECCCCEEECCCH
EFCRNILKMKYNINKNFILYVGGFSPRKNILGLIDAFYNLINIYKKDISLVIVGRKGKIY
HHHHHHHHHEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHH
EKYIERVRELNMEDKVFFPGFISVKDLPYFYNCAEIFVYPSFYEGFGLPPIEAMACGTPV
HHHHHHHHHCCCCCCEECCCEEEEECCCCEECEEEEEEECCHHCCCCCCCHHHHHCCCCE
ITSNVTSIPEITKDAAMLINPYDTDSICKAMYTALSNENMKNILIKRGLNRTSQLTWNNC
EECCCCCCCHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHH
AKSTLLAYKKILCSN
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]