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The map label for this gene is 226947262

Identifier: 226947262

GI number: 226947262

Start: 54640

End: 55203

Strand: Direct

Name: 226947262

Synonym: CLM_0063

Alternate gene names: NA

Gene position: 54640-55203 (Clockwise)

Preceding gene: 226947256

Following gene: 226947263

Centisome position: 1.31

GC content: 25.53

Gene sequence:

>564_bases
GTGAAAATAGATGAAGATAATTTTATAACGCAGCTAAAGTATAAAAATTCCAAGGCATTGGATTTTATTGTAGAGGAATA
TAGTAATATAGTTTTTAAAATTATACGTACTGTATTAAATTCAAATTTTCATTCTCAGTATGTAAAAGAATGCGCAAATG
ATGTATTTTGGTCTGTGTGGAGTAATATTGATAGTTTTGATGAGAACAAAGGAAACTTTAAACATTGGATTGCTGCTATA
TCTAAATATAAAGCTATAGATTACAAAAGAAAACTTTTCAAACAAAATAATATTGAATCTATAGATGATCATATATTATG
TGGTGATACTAGCATAGAAAAAGATTTCATATTAAATGAAAATAAAGAAGAAATTTTTGAAGTAATGAATTATATGAAAA
AAGAAGATCGGGAAATATTTATAAGAAGGTACTTTCTAGATGAAAAGGTAGAAAACATAGCTAAGATTTTGGGAGTGAAT
AGAAATTTAATAGATAAAAGGCTTTCAAGGGGACGTAAATTTTTGAGGGAAAAACTTATACTTTTGAAAGGAGAAATATT
ATGA

Upstream 100 bases:

>100_bases
TATCTTATATTATAATTTTAAAAATATATACAATTTCATGTCAGAAAATCAATAAACCCTTCGTATTAAATAATGAGAAA
CTTTTTAAGGAGGGAAATGT

Downstream 100 bases:

>100_bases
AGGGTAATAAAAAGATTAATTTACAAGAAAAAGAATTATATAAGTTATTTAACGAAATAAAATTTGAAGAAAGTGAGTTA
AATAATATGGAGGAAGAAGT

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase; RNA Polymerase Sigma-70 Factor Family; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-70factor; RNA Polymerase ECF-Type Sigma Factor

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MKIDEDNFITQLKYKNSKALDFIVEEYSNIVFKIIRTVLNSNFHSQYVKECANDVFWSVWSNIDSFDENKGNFKHWIAAI
SKYKAIDYKRKLFKQNNIESIDDHILCGDTSIEKDFILNENKEEIFEVMNYMKKEDREIFIRRYFLDEKVENIAKILGVN
RNLIDKRLSRGRKFLREKLILLKGEIL

Sequences:

>Translated_187_residues
MKIDEDNFITQLKYKNSKALDFIVEEYSNIVFKIIRTVLNSNFHSQYVKECANDVFWSVWSNIDSFDENKGNFKHWIAAI
SKYKAIDYKRKLFKQNNIESIDDHILCGDTSIEKDFILNENKEEIFEVMNYMKKEDREIFIRRYFLDEKVENIAKILGVN
RNLIDKRLSRGRKFLREKLILLKGEIL
>Mature_187_residues
MKIDEDNFITQLKYKNSKALDFIVEEYSNIVFKIIRTVLNSNFHSQYVKECANDVFWSVWSNIDSFDENKGNFKHWIAAI
SKYKAIDYKRKLFKQNNIESIDDHILCGDTSIEKDFILNENKEEIFEVMNYMKKEDREIFIRRYFLDEKVENIAKILGVN
RNLIDKRLSRGRKFLREKLILLKGEIL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22449; Mature: 22449

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIDEDNFITQLKYKNSKALDFIVEEYSNIVFKIIRTVLNSNFHSQYVKECANDVFWSVW
CCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
SNIDSFDENKGNFKHWIAAISKYKAIDYKRKLFKQNNIESIDDHILCGDTSIEKDFILNE
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCEEECCCCCCHHHHCCC
NKEEIFEVMNYMKKEDREIFIRRYFLDEKVENIAKILGVNRNLIDKRLSRGRKFLREKLI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LLKGEIL
HHHCCCC
>Mature Secondary Structure
MKIDEDNFITQLKYKNSKALDFIVEEYSNIVFKIIRTVLNSNFHSQYVKECANDVFWSVW
CCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
SNIDSFDENKGNFKHWIAAISKYKAIDYKRKLFKQNNIESIDDHILCGDTSIEKDFILNE
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCEEECCCCCCHHHHCCC
NKEEIFEVMNYMKKEDREIFIRRYFLDEKVENIAKILGVNRNLIDKRLSRGRKFLREKLI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LLKGEIL
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA