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The map label for this gene is nudC [H]

Identifier: 226947250

GI number: 226947250

Start: 36798

End: 37286

Strand: Direct

Name: nudC [H]

Synonym: CLM_0043

Alternate gene names: 226947250

Gene position: 36798-37286 (Clockwise)

Preceding gene: 226947249

Following gene: 226947251

Centisome position: 0.89

GC content: 28.83

Gene sequence:

>489_bases
ATGAAATTTAAATACTGTCCACTATGTGGGGAAAAATTAATTGAAAAATACAGTTGGGATGAAGGGGGAGTTCCATACTG
TAAAAGACATAATATAATGTATTTTGATACCCCTAAACCTTGTATTGTAGTAGGTGTACTTAAAGAAGATCATGTTTTGT
TATTAAAGCAAAGCTATATATTCAAAAATTCTAAAGTTCTTTTATCAGGATATGTATCTAGTGGAGAGACCGTTGAAGAA
GCTGTTCACAGAGAAGTTAAAGAAGAAGCTGGTATTAATATAAGAGATTTAAAATATCTAGGAAGTGATTATCTAGAGAG
TAAAGATATAGTCATGATTACATTTATGGCAACATATAGAGATGGAATTTTAAACAAATCAGAAGAAGTAGAATGGATTG
ATTGGATACCTATAAAAGAAGCCATAGATCATATGGAAGAAGATGAAATAGGGAAAAAAATAATAAAAAAAATAATGAAG
AATTGTTAA

Upstream 100 bases:

>100_bases
GAGAGTAGTATTTCTTTAAATAATCCTGTATCAATAGAAATCTAGACCAAAATTTAAAATTACGAGAAGTGGAGGGAAAG
CTTTTTATTAAGCTAAATAT

Downstream 100 bases:

>100_bases
AACAGTTATATATGAATAAATTTAAAATTTTAAGAAGAGGATAAAAATAAGAAGGGTTTTAATAAATACATATAGAATTT
ATCTATTGAAAAATCAAAGC

Product: NUDIX family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MKFKYCPLCGEKLIEKYSWDEGGVPYCKRHNIMYFDTPKPCIVVGVLKEDHVLLLKQSYIFKNSKVLLSGYVSSGETVEE
AVHREVKEEAGINIRDLKYLGSDYLESKDIVMITFMATYRDGILNKSEEVEWIDWIPIKEAIDHMEEDEIGKKIIKKIMK
NC

Sequences:

>Translated_162_residues
MKFKYCPLCGEKLIEKYSWDEGGVPYCKRHNIMYFDTPKPCIVVGVLKEDHVLLLKQSYIFKNSKVLLSGYVSSGETVEE
AVHREVKEEAGINIRDLKYLGSDYLESKDIVMITFMATYRDGILNKSEEVEWIDWIPIKEAIDHMEEDEIGKKIIKKIMK
NC
>Mature_162_residues
MKFKYCPLCGEKLIEKYSWDEGGVPYCKRHNIMYFDTPKPCIVVGVLKEDHVLLLKQSYIFKNSKVLLSGYVSSGETVEE
AVHREVKEEAGINIRDLKYLGSDYLESKDIVMITFMATYRDGILNKSEEVEWIDWIPIKEAIDHMEEDEIGKKIIKKIMK
NC

Specific function: Unknown

COG id: COG2816

COG function: function code L; NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Escherichia coli, GI48994995, Length=120, Percent_Identity=34.1666666666667, Blast_Score=77, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015375
- InterPro:   IPR022925
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR015376 [H]

Pfam domain/function: PF00293 NUDIX; PF09296 NUDIX-like; PF09297 zf-NADH-PPase [H]

EC number: =3.6.1.22 [H]

Molecular weight: Translated: 18847; Mature: 18847

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKYCPLCGEKLIEKYSWDEGGVPYCKRHNIMYFDTPKPCIVVGVLKEDHVLLLKQSYI
CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEHHHH
FKNSKVLLSGYVSSGETVEEAVHREVKEEAGINIRDLKYLGSDYLESKDIVMITFMATYR
HCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCHHHCCCCCEEEEEEEHHHH
DGILNKSEEVEWIDWIPIKEAIDHMEEDEIGKKIIKKIMKNC
HHCCCCCCCCCEEECCCHHHHHCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKFKYCPLCGEKLIEKYSWDEGGVPYCKRHNIMYFDTPKPCIVVGVLKEDHVLLLKQSYI
CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEHHHH
FKNSKVLLSGYVSSGETVEEAVHREVKEEAGINIRDLKYLGSDYLESKDIVMITFMATYR
HCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCHHHCCCCCEEEEEEEHHHH
DGILNKSEEVEWIDWIPIKEAIDHMEEDEIGKKIIKKIMKNC
HHCCCCCCCCCEEECCCHHHHHCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]