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The map label for this gene is stc [H]

Identifier: 226947241

GI number: 226947241

Start: 28379

End: 29941

Strand: Direct

Name: stc [H]

Synonym: CLM_0032

Alternate gene names: 226947241

Gene position: 28379-29941 (Clockwise)

Preceding gene: 226947237

Following gene: 226947242

Centisome position: 0.68

GC content: 24.18

Gene sequence:

>1563_bases
ATGAAATTAGAAATAATAACAGAAGATCGTTTAGGCATGGTGCTAGATATTTTAAATGTGTTATACAATGAGAGTATGGA
TATAAAATCTCTAGAGGTATTTCCTAAAAAAATATATATAAACATAAATAAAAAGATTTCTTACAACAAAAACATGATAA
TCAAGAAAATAAAAAATATAAAGGCAGTAGTAAGGGTAAAAAAGATAGATATACTGCCTTATGAAAAGGATGAAAAAAAA
TTGTTTACTATAATTGATTCTTTGGAGGAGGGAGTAATTTTTGTCAATGAAAAATGTCAAGTAGAGGTCTTTAATAAATA
CTGTGAAAACTTATTTAATACTTTAAAAGAAAATGCAATTAGAAAGCATATAAAAGAAATCTTGGGACAAAATCAACTCA
TATTAGATGCTTTAAAAATGGGAAAAGATTATGATAATTTACAAGTCTTCATTAATAATAAAGATAGAAAGGGAATGTAT
GTATCTACAGCACGAGCTATTAAAGATGATAAGAATAAAATAATAGGATTTGTTATATTAATAAAAGATTTAAAAGAAAC
TATTGAAATAGTAAATTCTATTAAATATAAGGAAGATGAAGCATTTAAGGGGATAATAGGAAAAAGTATCTGTATTGATA
ATTTAAAAGAAATATGTAAATCAGTTGCTAAAACAAATTCAACCGTATTAATTTGTGGAGAATCTGGAACAGGAAAAGAA
CTTTTTGCAAAGGCTATTTATAAATTAAGCTTGAGAAATAATAAAAACTTTGTTACTGTAAATTGCGCTGGTTTACAGGA
TAATTTAATAGAAAGTGAGCTTTTTGGTTATGAAGCAGGAAGTTTTACAGGAGCTAAATCTAATGGTAAAGAAGGTTTTT
TTAAGTTAGCGGATAAAGGTACTATATTTTTAGATGAAATTGGAGAACTTCCTCTTAATATTCAATGTAAATTTTTAAGA
GTATTACAAGAAGGAACTATAAGAAAAATAGGAAGTACAAAGGAAGAAAAAATAGATGTGAGAATAATTGCTGCTACTAA
TAAAAATTTAGAAGAAATGGTTTTAAAGGGAAAATTTAGAGAAGACTTATACTATAGATTAAATGTAGTACCTATAGAAA
TACCTCCACTAAGAGAAAGAAAAGAAGATATACAATTATTAGTAGATAATTTTGTAAAAGCTTTAAATAAAAGTTTAAAT
AAAAGTTTAAATAAAAATATTAGATATATAGATAAAAAATTTATAAATAAATTATTAAAATATAATTTCCCAGGTAATAT
TAGGGAACTTCAAAATATAATTGAAAGAACTATGAATTTGTGTTCGGACAATATATTAAGTGATAAAAACCTCAGTATAA
ATACTAATATTACATTAAATAATGATAAAAATAATGATAGTGGTGCATTACTTTTACAAGATATAGTGGAGAAAGCAGAA
AAATGTGCTATACAGAAGGTAATGAATGAATATAAAAGTTTAAGAAAAGTAGGCAAAGTATTAGGAGTTTCTCATACTAC
TGTAATGAATAAAATAAAAAAATATGGAATTGTATGTAAATAA

Upstream 100 bases:

>100_bases
TTATTTTTTGTAAATAGTAATATCAATTAAATATAATTTAAATTTGATATAATATAAAATAATAGGTATTATTTAGTATT
CCATAAAAGGGGCGAATTCT

Downstream 100 bases:

>100_bases
ATATTTACAATTGTAAAAAAATATTGCCAGTTTCAAATAAAATTATGTTATAGACTATTTATATCTTCAGGTTAATATAG
TTAATTTATATATTTAAGAC

Product: putative sensory box sigma-54 dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MKLEIITEDRLGMVLDILNVLYNESMDIKSLEVFPKKIYININKKISYNKNMIIKKIKNIKAVVRVKKIDILPYEKDEKK
LFTIIDSLEEGVIFVNEKCQVEVFNKYCENLFNTLKENAIRKHIKEILGQNQLILDALKMGKDYDNLQVFINNKDRKGMY
VSTARAIKDDKNKIIGFVILIKDLKETIEIVNSIKYKEDEAFKGIIGKSICIDNLKEICKSVAKTNSTVLICGESGTGKE
LFAKAIYKLSLRNNKNFVTVNCAGLQDNLIESELFGYEAGSFTGAKSNGKEGFFKLADKGTIFLDEIGELPLNIQCKFLR
VLQEGTIRKIGSTKEEKIDVRIIAATNKNLEEMVLKGKFREDLYYRLNVVPIEIPPLRERKEDIQLLVDNFVKALNKSLN
KSLNKNIRYIDKKFINKLLKYNFPGNIRELQNIIERTMNLCSDNILSDKNLSINTNITLNNDKNNDSGALLLQDIVEKAE
KCAIQKVMNEYKSLRKVGKVLGVSHTTVMNKIKKYGIVCK

Sequences:

>Translated_520_residues
MKLEIITEDRLGMVLDILNVLYNESMDIKSLEVFPKKIYININKKISYNKNMIIKKIKNIKAVVRVKKIDILPYEKDEKK
LFTIIDSLEEGVIFVNEKCQVEVFNKYCENLFNTLKENAIRKHIKEILGQNQLILDALKMGKDYDNLQVFINNKDRKGMY
VSTARAIKDDKNKIIGFVILIKDLKETIEIVNSIKYKEDEAFKGIIGKSICIDNLKEICKSVAKTNSTVLICGESGTGKE
LFAKAIYKLSLRNNKNFVTVNCAGLQDNLIESELFGYEAGSFTGAKSNGKEGFFKLADKGTIFLDEIGELPLNIQCKFLR
VLQEGTIRKIGSTKEEKIDVRIIAATNKNLEEMVLKGKFREDLYYRLNVVPIEIPPLRERKEDIQLLVDNFVKALNKSLN
KSLNKNIRYIDKKFINKLLKYNFPGNIRELQNIIERTMNLCSDNILSDKNLSINTNITLNNDKNNDSGALLLQDIVEKAE
KCAIQKVMNEYKSLRKVGKVLGVSHTTVMNKIKKYGIVCK
>Mature_520_residues
MKLEIITEDRLGMVLDILNVLYNESMDIKSLEVFPKKIYININKKISYNKNMIIKKIKNIKAVVRVKKIDILPYEKDEKK
LFTIIDSLEEGVIFVNEKCQVEVFNKYCENLFNTLKENAIRKHIKEILGQNQLILDALKMGKDYDNLQVFINNKDRKGMY
VSTARAIKDDKNKIIGFVILIKDLKETIEIVNSIKYKEDEAFKGIIGKSICIDNLKEICKSVAKTNSTVLICGESGTGKE
LFAKAIYKLSLRNNKNFVTVNCAGLQDNLIESELFGYEAGSFTGAKSNGKEGFFKLADKGTIFLDEIGELPLNIQCKFLR
VLQEGTIRKIGSTKEEKIDVRIIAATNKNLEEMVLKGKFREDLYYRLNVVPIEIPPLRERKEDIQLLVDNFVKALNKSLN
KSLNKNIRYIDKKFINKLLKYNFPGNIRELQNIIERTMNLCSDNILSDKNLSINTNITLNNDKNNDSGALLLQDIVEKAE
KCAIQKVMNEYKSLRKVGKVLGVSHTTVMNKIKKYGIVCK

Specific function: Unknown

COG id: COG3283

COG function: function code KE; Transcriptional regulator of aromatic amino acids metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=455, Percent_Identity=34.2857142857143, Blast_Score=273, Evalue=3e-74,
Organism=Escherichia coli, GI1787583, Length=532, Percent_Identity=30.8270676691729, Blast_Score=271, Evalue=8e-74,
Organism=Escherichia coli, GI87082117, Length=392, Percent_Identity=38.5204081632653, Blast_Score=267, Evalue=1e-72,
Organism=Escherichia coli, GI1789087, Length=323, Percent_Identity=42.7244582043344, Blast_Score=251, Evalue=9e-68,
Organism=Escherichia coli, GI1788550, Length=310, Percent_Identity=43.2258064516129, Blast_Score=249, Evalue=3e-67,
Organism=Escherichia coli, GI1788905, Length=331, Percent_Identity=38.6706948640483, Blast_Score=238, Evalue=7e-64,
Organism=Escherichia coli, GI1790437, Length=314, Percent_Identity=39.4904458598726, Blast_Score=238, Evalue=8e-64,
Organism=Escherichia coli, GI1786524, Length=325, Percent_Identity=35.0769230769231, Blast_Score=230, Evalue=2e-61,
Organism=Escherichia coli, GI1790299, Length=339, Percent_Identity=35.9882005899705, Blast_Score=223, Evalue=2e-59,
Organism=Escherichia coli, GI87082152, Length=237, Percent_Identity=47.2573839662447, Blast_Score=217, Evalue=1e-57,
Organism=Escherichia coli, GI87081872, Length=322, Percent_Identity=34.472049689441, Blast_Score=193, Evalue=2e-50,
Organism=Escherichia coli, GI87081858, Length=441, Percent_Identity=25.8503401360544, Blast_Score=150, Evalue=3e-37,
Organism=Escherichia coli, GI1789828, Length=235, Percent_Identity=34.0425531914894, Blast_Score=136, Evalue=4e-33,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 59498; Mature: 59498

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLEIITEDRLGMVLDILNVLYNESMDIKSLEVFPKKIYININKKISYNKNMIIKKIKNI
CEEEEECCCHHHHHHHHHHHHHCCCCCCCHHEECCEEEEEEECCEECCCCHHHHHHHHHH
KAVVRVKKIDILPYEKDEKKLFTIIDSLEEGVIFVNEKCQVEVFNKYCENLFNTLKENAI
HHHHEEEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
RKHIKEILGQNQLILDALKMGKDYDNLQVFINNKDRKGMYVSTARAIKDDKNKIIGFVIL
HHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEHHHHHHCCCCCEEEHHHH
IKDLKETIEIVNSIKYKEDEAFKGIIGKSICIDNLKEICKSVAKTNSTVLICGESGTGKE
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH
LFAKAIYKLSLRNNKNFVTVNCAGLQDNLIESELFGYEAGSFTGAKSNGKEGFFKLADKG
HHHHHHHHHEECCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCC
TIFLDEIGELPLNIQCKFLRVLQEGTIRKIGSTKEEKIDVRIIAATNKNLEEMVLKGKFR
EEEEEHHCCCCCCCHHHHHHHHHHCCHHHCCCCCCCCEEEEEEEECCCCHHHHHHHCCHH
EDLYYRLNVVPIEIPPLRERKEDIQLLVDNFVKALNKSLNKSLNKNIRYIDKKFINKLLK
HCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
YNFPGNIRELQNIIERTMNLCSDNILSDKNLSINTNITLNNDKNNDSGALLLQDIVEKAE
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHH
KCAIQKVMNEYKSLRKVGKVLGVSHTTVMNKIKKYGIVCK
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKLEIITEDRLGMVLDILNVLYNESMDIKSLEVFPKKIYININKKISYNKNMIIKKIKNI
CEEEEECCCHHHHHHHHHHHHHCCCCCCCHHEECCEEEEEEECCEECCCCHHHHHHHHHH
KAVVRVKKIDILPYEKDEKKLFTIIDSLEEGVIFVNEKCQVEVFNKYCENLFNTLKENAI
HHHHEEEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
RKHIKEILGQNQLILDALKMGKDYDNLQVFINNKDRKGMYVSTARAIKDDKNKIIGFVIL
HHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEHHHHHHCCCCCEEEHHHH
IKDLKETIEIVNSIKYKEDEAFKGIIGKSICIDNLKEICKSVAKTNSTVLICGESGTGKE
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH
LFAKAIYKLSLRNNKNFVTVNCAGLQDNLIESELFGYEAGSFTGAKSNGKEGFFKLADKG
HHHHHHHHHEECCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCC
TIFLDEIGELPLNIQCKFLRVLQEGTIRKIGSTKEEKIDVRIIAATNKNLEEMVLKGKFR
EEEEEHHCCCCCCCHHHHHHHHHHCCHHHCCCCCCCCEEEEEEEECCCCHHHHHHHCCHH
EDLYYRLNVVPIEIPPLRERKEDIQLLVDNFVKALNKSLNKSLNKNIRYIDKKFINKLLK
HCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
YNFPGNIRELQNIIERTMNLCSDNILSDKNLSINTNITLNNDKNNDSGALLLQDIVEKAE
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHH
KCAIQKVMNEYKSLRKVGKVLGVSHTTVMNKIKKYGIVCK
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA