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The map label for this gene is psd [H]

Identifier: 226947238

GI number: 226947238

Start: 25001

End: 25888

Strand: Reverse

Name: psd [H]

Synonym: CLM_0028

Alternate gene names: 226947238

Gene position: 25888-25001 (Counterclockwise)

Preceding gene: 226947239

Following gene: NA

Centisome position: 0.62

GC content: 24.1

Gene sequence:

>888_bases
ATGATAAAATATTACAATAGAAAAACTAACGATTATGATATAGAAAAAGTTGCAGGTGAAAAATATTTAAATTGGACTTA
TTCTTCACCTATGGGTATGAATCTTTTAGAAATATTTATAAAAAAGAAATTTTTCTCGAAAATATATGGATTTTATTGTG
ATAGAAGGTTAAGTCACAATAAAATAGATAAATTTATTAATGATTTTCAAATTGATATGTCTTTATGTGAAAATCAAACA
AGTGACTTTAAATGTTTTAATGATTTTTTTACTAGAAAATTAAAAAAAGAAGCTAGACCTATAAAAGCTGATAAAAATAT
TTTAATATCCCCAGGTGATGGTAAAATACTTGCATATAAAAATTTAAATCTAAATTCAGTAACTGAAGTAAAAGGAATCA
ATTATAGTTTTTATGAATTAATAAATAATGATTCATTAGCAAAAGAATATGACAATGGAACTTGCTTAATTTTAAGATTA
TGTCCCACAGACTATCATAGATTTCATTTTATAGACAATGGTACCTGTGAAAATACTATAAAGCTAGATGGTTTTTACTA
TTCAGTAAATCCAATTGCATTATCTAAAATTCCTAGTTTATTTTGCAAAAACAAAAGAGAGTATGCTATTTTTCATAGTG
AAAACTTTGGTGATGTAATATTTATGGAAGTTGGAGCAACCTGTGTAGGTTCTATAATACAGACTTATAAACCTAATACT
AAAATTTTTAAAGGTGATGAAAAAGGTTATTTTAAATTTGGAGGATCCACAGTAATTTTATTCTTCAAAGAAAATACTAT
AAAAGTTGATAATGATATATTAAATCAAAGTAAATTAGGATATGAAACATCTGTTATAATGGGAGAACCTATTGGGAGCA
AAAAATAA

Upstream 100 bases:

>100_bases
TATTTATGAATATTTCCGCTATTTCTATTAATTTATTGACATTTATAGCTAATTAAATAATAATTAATTTATCATATTTT
ACTTAGAAAGAGGTTTTTTA

Downstream 100 bases:

>100_bases
AAAGTCTTTCGATAAATCGAAAGACTTTTTATTTATGGTGCACCGGGCAGGATTCGAACCCGCGGCCAACTGGTTCGTAG
CCAGCTACTCTATCCAACTG

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MIKYYNRKTNDYDIEKVAGEKYLNWTYSSPMGMNLLEIFIKKKFFSKIYGFYCDRRLSHNKIDKFINDFQIDMSLCENQT
SDFKCFNDFFTRKLKKEARPIKADKNILISPGDGKILAYKNLNLNSVTEVKGINYSFYELINNDSLAKEYDNGTCLILRL
CPTDYHRFHFIDNGTCENTIKLDGFYYSVNPIALSKIPSLFCKNKREYAIFHSENFGDVIFMEVGATCVGSIIQTYKPNT
KIFKGDEKGYFKFGGSTVILFFKENTIKVDNDILNQSKLGYETSVIMGEPIGSKK

Sequences:

>Translated_295_residues
MIKYYNRKTNDYDIEKVAGEKYLNWTYSSPMGMNLLEIFIKKKFFSKIYGFYCDRRLSHNKIDKFINDFQIDMSLCENQT
SDFKCFNDFFTRKLKKEARPIKADKNILISPGDGKILAYKNLNLNSVTEVKGINYSFYELINNDSLAKEYDNGTCLILRL
CPTDYHRFHFIDNGTCENTIKLDGFYYSVNPIALSKIPSLFCKNKREYAIFHSENFGDVIFMEVGATCVGSIIQTYKPNT
KIFKGDEKGYFKFGGSTVILFFKENTIKVDNDILNQSKLGYETSVIMGEPIGSKK
>Mature_295_residues
MIKYYNRKTNDYDIEKVAGEKYLNWTYSSPMGMNLLEIFIKKKFFSKIYGFYCDRRLSHNKIDKFINDFQIDMSLCENQT
SDFKCFNDFFTRKLKKEARPIKADKNILISPGDGKILAYKNLNLNSVTEVKGINYSFYELINNDSLAKEYDNGTCLILRL
CPTDYHRFHFIDNGTCENTIKLDGFYYSVNPIALSKIPSLFCKNKREYAIFHSENFGDVIFMEVGATCVGSIIQTYKPNT
KIFKGDEKGYFKFGGSTVILFFKENTIKVDNDILNQSKLGYETSVIMGEPIGSKK

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 2 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=307, Percent_Identity=25.0814332247557, Blast_Score=77, Evalue=2e-14,
Organism=Escherichia coli, GI1790604, Length=279, Percent_Identity=31.5412186379928, Blast_Score=135, Evalue=3e-33,
Organism=Caenorhabditis elegans, GI71980843, Length=209, Percent_Identity=28.7081339712919, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71980840, Length=209, Percent_Identity=29.1866028708134, Blast_Score=88, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6321609, Length=241, Percent_Identity=39.0041493775934, Blast_Score=155, Evalue=5e-39,
Organism=Drosophila melanogaster, GI24649526, Length=273, Percent_Identity=26.7399267399267, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24649528, Length=273, Percent_Identity=26.7399267399267, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24649524, Length=273, Percent_Identity=26.7399267399267, Blast_Score=79, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 34163; Mature: 34163

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKYYNRKTNDYDIEKVAGEKYLNWTYSSPMGMNLLEIFIKKKFFSKIYGFYCDRRLSHN
CCEECCCCCCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
KIDKFINDFQIDMSLCENQTSDFKCFNDFFTRKLKKEARPIKADKNILISPGDGKILAYK
HHHHHHHHHHEEHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEE
NLNLNSVTEVKGINYSFYELINNDSLAKEYDNGTCLILRLCPTDYHRFHFIDNGTCENTI
CCCCCCCCEECCCCCHHHHHHCCCCHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCEE
KLDGFYYSVNPIALSKIPSLFCKNKREYAIFHSENFGDVIFMEVGATCVGSIIQTYKPNT
EEEEEEEEECCEEHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHCCCCC
KIFKGDEKGYFKFGGSTVILFFKENTIKVDNDILNQSKLGYETSVIMGEPIGSKK
CEEECCCCCEEEECCCEEEEEEECCEEEECHHHHCHHCCCCEEEEEEECCCCCCC
>Mature Secondary Structure
MIKYYNRKTNDYDIEKVAGEKYLNWTYSSPMGMNLLEIFIKKKFFSKIYGFYCDRRLSHN
CCEECCCCCCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
KIDKFINDFQIDMSLCENQTSDFKCFNDFFTRKLKKEARPIKADKNILISPGDGKILAYK
HHHHHHHHHHEEHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEE
NLNLNSVTEVKGINYSFYELINNDSLAKEYDNGTCLILRLCPTDYHRFHFIDNGTCENTI
CCCCCCCCEECCCCCHHHHHHCCCCHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCEE
KLDGFYYSVNPIALSKIPSLFCKNKREYAIFHSENFGDVIFMEVGATCVGSIIQTYKPNT
EEEEEEEEECCEEHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHCCCCC
KIFKGDEKGYFKFGGSTVILFFKENTIKVDNDILNQSKLGYETSVIMGEPIGSKK
CEEECCCCCEEEECCCEEEEEEECCEEEECHHHHCHHCCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA