Definition Gemmatimonas aurantiaca T-27, complete genome.
Accession NC_012489
Length 4,636,964

Click here to switch to the map view.

The map label for this gene is ligA

Identifier: 226226196

GI number:

Start: 945317

End: 947386

Strand: Reverse

Name: ligA

Synonym: GAU_0790

Alternate gene names: NA

Gene position: NA

Preceding gene: 226226198

Following gene: 226226195

Centisome position: NA

GC content: NA

Gene sequence:

>2070_bases
ATGACCGCGTCATCGGGAACTCCACCACACCAGACGGTTGAGCGCGCTCGCGAATTGCGCGAACAGCTCGGCACCGCCCA
GCACGAGTACTACGTCCTCGATCGCCCCACACTCTCCGATCAGGAATACGATCGACTGTTCCGGGAGCTGCAGGGCATCG
AGGCGGAATACCCCACGTTGTGCACGGAAGATTCACCCACCCGACGAGTCGGTGCCCCCGTACAGTCCGCGTTCAGCCCG
CACCGGCATCTGGTGCGTATGCTGTCTCTGGACAATGCGTTCGATCTCAGCGAGCTGGAAGACTTCGAGCAGTCACTCAA
GCGCGTCGTTGGTGACGCGATACACACATCGGGGTACACCGTCGAGCTCAAGATCGATGGGGCCGCGGTAGCGCTGACCT
ATCGCGAGGGCGTGCTGGTCACGGCGGCGACCCGAGGCGATGGTACGGATGGCGAGGACGTCACCGCCAATGTGCGCACC
ATCCGGGGTGTACCGTTGCGCCTCCATGGCGACAACCATCCGCCGCTGATGGAAGTGCGTGGTGAGGTGTACCTGCCCTT
CGCCGGCTTCGAGCGCATGAACGAAGCGCGTGTGGCCGCTGGTGAGCCCGTGTATGTGAATCCGCGCAACGCCGCCGCCG
GCTCCATGCGCCAGCTCGATTCGGCGAACACCGCCGCCCGACCGCTGCGTTTTTTCGGATACGCGGCCGTGTTGCCCGAT
GGCAGCGCACCGGCGCGTTCACAGTGGGAGTTGCTCGAGCAGCTCAGTGCGTGGGGGGTGCCGGTTGCGCCACATCGTCA
GCGTTGCCACACCATTCAGGAAGCCGAAGCCTGGGCCACGGTGGTGGAGCACGAGACACGTGCCACGCTGGGGTTCGCGA
TCGATGGCGGTGTGGTGAAGGTGAACGACATGGCCCTGCAGGACGAGCTGGGCATTCGGGCCGATCGCACCCCCCGCTGG
GGCGTGGCGCGGAAGTTTGCGCCGGACATGGCGCTCACAAAATTGCGTCGCATCGATGTGAACGTGGGGCGAACCGGTGT
GCTCACACCGTTTGCCGTGCTCGAACCGGTCGATGTTGGCGGGGCGACGGTGACCTTTGCGTCACTGCACAATGCCGATC
AGATCGCGGCCAAGGATCTGCGGGAAGGCGACACGGTGCAGGTGGTACGCGCAGGAGATGTCATCCCGTACGTGTTGGGT
CCGGTCCCCGAGCAGCGCGATGGTTCGCAGCAGCCCTGGTCGATGCCCACACAGTGTCCGCGCTGCAATACGCCAGTTGA
GCGGTATGGCGACGACGTGGCGGTGTACTGCCCCAACGTCGCCTGTCCGGGGAGGCAACTCGAAGGGCTGGTGCATTTTT
CCAGCAAGGACGCGCTCGATATCGATGGCCTGAGCTACGCGCGCATTCAGCAACTGCTCGACGCCGGCCTGGTGCACGAT
GTCGCCGACCTGTTCGACATCACCGTCGATCAGCTCACCAGCCTCGAGCGATTCGCGAAGAAGAGCGCTGAAAATCTGGT
GGCAGCGATTGCCGCCGCGAAGCAGCAGCCGCTGTCGCGACTCATGTTTGGTCTTGGCATTCGGCATGTCGGTGCACAGG
CCGCGCAACTGTTGTCACGTCAGTACGGTTCGCTGGACGCCCTGATGAACGCCACCGCGGAACAACTCGGGGCCGTGCGC
GGCATCGGGTCGATCATCGCCCAGTCGGTGGCCAGCTATTTTGCCGACCCCACGACGCGCGCCCTGATGGAACGGCTTCG
CGCGCGCGGCCTGCGCTTCGACGAACCCAATGCCGTGCAGGCCGATGGCGTGCTCACCGGAGCCACGGTCGTGCTCACCG
GCACGTTGCCCTCGCTCTCGCGTGGTGAAGCCACGGCCCTCGTGGAGCAGGCCGGGGGGCGGGTGACCAGCAGTGTCTCC
AAAAAGACCACCTTTGTCGTGGCCGGCGAAGAAGCCGGCAGCAAGCTCGACAAGGCCAAGGAGCTGGGCGTCACGGTGCT
GACGGAAGCCGAGTTGCTGGAGAAACTGTCCGGGGCATCGGCTGATGCATCGGCTGATGCATCGGCCTGA

Upstream 100 bases:

>100_bases
CGCGCCACACGACGCGTTTCGTCATCTCTCGAATCATCCATCTCGCGATCCTCCTCAGTTCGATGATGAGTTTCCACTCA
GGGAATGGTAGATTCCCGAC

Downstream 100 bases:

>100_bases
CCATACACCCGTGGCCGGTTCCGTCACACCGGCGGTCCTCTCCCCCCGCTTGACGTGACGGGGCCCGTGGGCGAGCGTCA
CCGGAACATGAGCACCTCGA

Product: NAD(+)-dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>689_residues
MTASSGTPPHQTVERARELREQLGTAQHEYYVLDRPTLSDQEYDRLFRELQGIEAEYPTLCTEDSPTRRVGAPVQSAFSP
HRHLVRMLSLDNAFDLSELEDFEQSLKRVVGDAIHTSGYTVELKIDGAAVALTYREGVLVTAATRGDGTDGEDVTANVRT
IRGVPLRLHGDNHPPLMEVRGEVYLPFAGFERMNEARVAAGEPVYVNPRNAAAGSMRQLDSANTAARPLRFFGYAAVLPD
GSAPARSQWELLEQLSAWGVPVAPHRQRCHTIQEAEAWATVVEHETRATLGFAIDGGVVKVNDMALQDELGIRADRTPRW
GVARKFAPDMALTKLRRIDVNVGRTGVLTPFAVLEPVDVGGATVTFASLHNADQIAAKDLREGDTVQVVRAGDVIPYVLG
PVPEQRDGSQQPWSMPTQCPRCNTPVERYGDDVAVYCPNVACPGRQLEGLVHFSSKDALDIDGLSYARIQQLLDAGLVHD
VADLFDITVDQLTSLERFAKKSAENLVAAIAAAKQQPLSRLMFGLGIRHVGAQAAQLLSRQYGSLDALMNATAEQLGAVR
GIGSIIAQSVASYFADPTTRALMERLRARGLRFDEPNAVQADGVLTGATVVLTGTLPSLSRGEATALVEQAGGRVTSSVS
KKTTFVVAGEEAGSKLDKAKELGVTVLTEAELLEKLSGASADASADASA

Sequences:
NA

Specific function: NA

COG id: COG0272

COG function: function code L; NAD-dependent DNA ligase (contains BRCT domain type II)

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA