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The map label for this gene is ybaF [H]

Identifier: 226225145

GI number: 226225145

Start: 2652554

End: 2653351

Strand: Reverse

Name: ybaF [H]

Synonym: Lm4b_02566

Alternate gene names: 226225145

Gene position: 2653351-2652554 (Counterclockwise)

Preceding gene: 226225146

Following gene: 226225144

Centisome position: 91.1

GC content: 39.22

Gene sequence:

>798_bases
ATGATGGATAAAATGATTCTCGGACGTTATATTCCGGGAAACTCTTGGTTGCATCGAATTGACCCACGTGCGAAAATCAC
TGCTGTTATGGCGTTTATCGCGATTGTCTTTTTAGCGAACAATTGGCTGACCTATGCGCTTATGTTTGCGTATGTTTTGT
ATTTAGTCCTAACTTCGAAAGTGCCATTTTTATTTTTTATTAAAGGGTTACAACCGATTTTCTGGCTTATTTTAATTACG
CTATTACTTCAAGTCTTTTTTACAAAAGGCGGGACAGTTTTAGTCGATCTAGGACTTTTACAAATAACGACACTCGGACT
GACAAATGGAGCGATGATGTTTTGTCGCTTTGTTCTCATTATTTTTATGACAACACTTTTAACATTAACGACAAGCCCGA
TTGAACTAACAGACGGACTGGAGAAAATTTTAGCGCCGTTTCGTTTAGTGCATTTACCAGTACATGAACTTGCTTTGATG
CTGAGTATTTCTTTGCGCTTTATTCCAACATTGATGGATGAAACGGAGAAAATTTTAAAAGCGCAAAAAGCTCGTGGCGT
TGAATTTACGAGTGGGAAATGGAGTGATCGGATTAAAGCGATTATTCCGTTGCTTGTGCCACTTTTTATTAGTGCGTTTA
AACGTGCGGAAGATTTAGCGATTGCAATGGAAGCACGCGGTTATCGTGGTGGTAAAGGGAGAACGAGATTCCGTTTACTA
CGCTGGCGATTTGCAGATACGTTGCTACTGATTTCGTTAGTAGTGTTAAGTGGATTATTATTTTGGTTGCGGAGTTGA

Upstream 100 bases:

>100_bases
TTGAGCGCAAATTTGATGTGAAATTAACAAAAACTTGTTTAACCATTGATGAATTAACAACCGAAATGGCGCCTTATTTA
GCGAAGGGCGGGGCATAATT

Downstream 100 bases:

>100_bases
AATAAATGACGAGATATAAAGCGATAATTTCTTATGATGGTAGCGGGTTTTATGGCTATCAGGTGCAGCCGAATACACGG
ACGGTCCAAGCGGAAATTGA

Product: cobalt ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLTYALMFAYVLYLVLTSKVPFLFFIKGLQPIFWLILIT
LLLQVFFTKGGTVLVDLGLLQITTLGLTNGAMMFCRFVLIIFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALM
LSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRLL
RWRFADTLLLISLVVLSGLLFWLRS

Sequences:

>Translated_265_residues
MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLTYALMFAYVLYLVLTSKVPFLFFIKGLQPIFWLILIT
LLLQVFFTKGGTVLVDLGLLQITTLGLTNGAMMFCRFVLIIFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALM
LSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRLL
RWRFADTLLLISLVVLSGLLFWLRS
>Mature_265_residues
MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLTYALMFAYVLYLVLTSKVPFLFFIKGLQPIFWLILIT
LLLQVFFTKGGTVLVDLGLLQITTLGLTNGAMMFCRFVLIIFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALM
LSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRLL
RWRFADTLLLISLVVLSGLLFWLRS

Specific function: Unknown

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 30172; Mature: 30172

Theoretical pI: Translated: 10.90; Mature: 10.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLTYALMFAYVLYLVLTSK
CCCCHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VPFLFFIKGLQPIFWLILITLLLQVFFTKGGTVLVDLGLLQITTLGLTNGAMMFCRFVLI
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHH
IFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALMLSISLRFIPTLMDETEKILK
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRLL
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
RWRFADTLLLISLVVLSGLLFWLRS
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLTYALMFAYVLYLVLTSK
CCCCHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VPFLFFIKGLQPIFWLILITLLLQVFFTKGGTVLVDLGLLQITTLGLTNGAMMFCRFVLI
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHH
IFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALMLSISLRFIPTLMDETEKILK
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRLL
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
RWRFADTLLLISLVVLSGLLFWLRS
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]