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The map label for this gene is ywhC [H]

Identifier: 226225110

GI number: 226225110

Start: 2614339

End: 2614992

Strand: Reverse

Name: ywhC [H]

Synonym: Lm4b_02531

Alternate gene names: 226225110

Gene position: 2614992-2614339 (Counterclockwise)

Preceding gene: 226225112

Following gene: 226225109

Centisome position: 89.78

GC content: 37.0

Gene sequence:

>654_bases
ATGCCTAGTTTTCTCGCGTATCCACTCGAAATGATACCGTATGTTTTAGTTACATTATTAATTGCTTTTACTATTCATGA
ATGGGCACACGCCTTGGTTGCTCTCGCATTTGGAGATGATACAGCTAAAAATGAGGGGAGACTCTCTTTAAACCCCGTTG
TACATATTGATTTATTCGGTTTGCTAATGATATTAATTGCAGGCTTTGGTTGGGCTAAGCCGACCCCGGTAAATCGATTT
AAATTAAAAAAACGCCGCCTTGGAAGTATACTTGTTTCGCTTGCAGGACCAGTAAGTAATTTACTACTTGCGATGGTTGG
TGTGGGGTTATATGCTTTATTTCTAAATTATTCCTTCTTTACATATGGCTCCGTTGCGGAAACTTTTTTAATGATTTTTG
TGCAATTAAATCTAGTCTTGTTTGTGTTTAACTTGATTCCGCTACCGCCGCTTGATGGGTATCAAATACTAGTGGAGTTT
CTGCCAATGTCAACCAGGTCTAAGCTGGAACCACTTGAACGCTATGCGATGCTTATTTTCTTAGTAGTTGCATTAACACC
TATTTCAGAATTTACGATTCAACCAATTTTTAATACCGTTATTCCATTTGTTTTAAATGTGATTTTGACAATATTTGGTC
TGACATCATTTTAA

Upstream 100 bases:

>100_bases
TAAAAATTGAATGGTAACAAATGGCATTTTCTCACCTCGATCAACGTTTTTTTCATTATAGCATATAAAAATTGCTCAAT
AAAAGATAAAGGAGGCTCCT

Downstream 100 bases:

>100_bases
CCTGTTGCTTTTCATGTTATTTTTCACTATAATATAATGCGTCTATTCTTCTGACCGGAAAGGGGTAAATAAGCGATATG
ACTGCCAACCAAATGGAACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MPSFLAYPLEMIPYVLVTLLIAFTIHEWAHALVALAFGDDTAKNEGRLSLNPVVHIDLFGLLMILIAGFGWAKPTPVNRF
KLKKRRLGSILVSLAGPVSNLLLAMVGVGLYALFLNYSFFTYGSVAETFLMIFVQLNLVLFVFNLIPLPPLDGYQILVEF
LPMSTRSKLEPLERYAMLIFLVVALTPISEFTIQPIFNTVIPFVLNVILTIFGLTSF

Sequences:

>Translated_217_residues
MPSFLAYPLEMIPYVLVTLLIAFTIHEWAHALVALAFGDDTAKNEGRLSLNPVVHIDLFGLLMILIAGFGWAKPTPVNRF
KLKKRRLGSILVSLAGPVSNLLLAMVGVGLYALFLNYSFFTYGSVAETFLMIFVQLNLVLFVFNLIPLPPLDGYQILVEF
LPMSTRSKLEPLERYAMLIFLVVALTPISEFTIQPIFNTVIPFVLNVILTIFGLTSF
>Mature_216_residues
PSFLAYPLEMIPYVLVTLLIAFTIHEWAHALVALAFGDDTAKNEGRLSLNPVVHIDLFGLLMILIAGFGWAKPTPVNRFK
LKKRRLGSILVSLAGPVSNLLLAMVGVGLYALFLNYSFFTYGSVAETFLMIFVQLNLVLFVFNLIPLPPLDGYQILVEFL
PMSTRSKLEPLERYAMLIFLVVALTPISEFTIQPIFNTVIPFVLNVILTIFGLTSF

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 24229; Mature: 24097

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSFLAYPLEMIPYVLVTLLIAFTIHEWAHALVALAFGDDTAKNEGRLSLNPVVHIDLFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHH
LLMILIAGFGWAKPTPVNRFKLKKRRLGSILVSLAGPVSNLLLAMVGVGLYALFLNYSFF
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
TYGSVAETFLMIFVQLNLVLFVFNLIPLPPLDGYQILVEFLPMSTRSKLEPLERYAMLIF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LVVALTPISEFTIQPIFNTVIPFVLNVILTIFGLTSF
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PSFLAYPLEMIPYVLVTLLIAFTIHEWAHALVALAFGDDTAKNEGRLSLNPVVHIDLFG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHH
LLMILIAGFGWAKPTPVNRFKLKKRRLGSILVSLAGPVSNLLLAMVGVGLYALFLNYSFF
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
TYGSVAETFLMIFVQLNLVLFVFNLIPLPPLDGYQILVEFLPMSTRSKLEPLERYAMLIF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LVVALTPISEFTIQPIFNTVIPFVLNVILTIFGLTSF
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]