Click here to switch to the map view.

The map label for this gene is 226224993

Identifier: 226224993

GI number: 226224993

Start: 2486839

End: 2487783

Strand: Reverse

Name: 226224993

Synonym: Lm4b_02414

Alternate gene names: NA

Gene position: 2487783-2486839 (Counterclockwise)

Preceding gene: 226224994

Following gene: 226224992

Centisome position: 85.41

GC content: 35.87

Gene sequence:

>945_bases
ATGAAAAAAATAATTGGGCTAGCATTTATAGCTTTTTGTTGCATATTATTTGCACCAACTATAAAAGCACAAGCGGATAC
AGTTCCCTTACCAGCGCCTATTATTGAGGCTTTTCCTGTGGAAGCGATAGCGGAGGCGATTGCGGGAGAACTAGATAAAG
ATTCTGTAAATGACACGATTACGCAAGCAGATTTGGATACAATGACTCTTATTCCTTTGCCCTCATTGGGTTTAACGGGG
GAAGACTTAAGCGTACTAAACAATGAAGTATTTACAAACGCGATTGAATTAGCGATTTGGAGTAATAATATTGGAGAACT
GCCTGATTTATCTGATGCGCTTCCTGCTTTAGAAAATATTGAAGCAAATGGGGCTAATATTACTCTTTTTCCAGATGCAA
ACTATCCTAACTTAACCAATGTTGATTTGAGTCAAAATAATTTTGGCTTTAATATTCCAAAATTTGTTGGAATGGAAGGA
CTAGTAAGTATTAATATGGAGGATGCTGGACTTTCTGGTTATGTAGCGGAAGATATTTGGATGAATATGCCTAACTTAGA
TTCACTACTTCTTAATGAGAATCATTTAATTTCTATTCCGGAAGATATCTTTCTATCAGAACAATTAAGTACACATTCAT
TTGCTAACCAGACAGCAACTTATCCTCACACAACGATTAAACAAGGAGAGAACTTGGAAGTTTTTGTTCCTTTTATTTAC
CAAGCATTAGATTTTATCGCACCAAGCAGACACGATTTAATTATTATTAAGGACAATGGTAGAACGCTTTATGAACCACC
TTATCCGACCTATGATGGTTCATACATGTACAAGATTGAAACAGCTGGCTTACAACCGGGAGAGCATTTGCTAGAAATTT
CATTAGGTTATAACTCTGGAGAATATACGGGTTGGTATGATTTTCCAGTAACTATTACAGAATAA

Upstream 100 bases:

>100_bases
AGCGGGAATAAATTTTGACCATGTAGTATTTAAGAAATAAATCCAATAAGCCACCCTTTTATGGATAGAGAGGGTGGCTA
TGTTGAAAGGATTGAACTGA

Downstream 100 bases:

>100_bases
AAAGGGGCGAGATGATGAAAAAAGGTATGAAACAAGTTTGTGTCAGTATGGCTGTTGTACCACTAGTTTGGCTGAATTTA
GGGATAACTCAGCCGTTACA

Product: internalin

Products: NA

Alternate protein names: InteRNAlin-Like Leucine-Rich Repeat Domain Protein; InteRNAlin; InteRNAlin Protein; Cell Surface Protein InteRNAlin Protein; Cell Surface Protein InteRNAlin Proteins

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MKKIIGLAFIAFCCILFAPTIKAQADTVPLPAPIIEAFPVEAIAEAIAGELDKDSVNDTITQADLDTMTLIPLPSLGLTG
EDLSVLNNEVFTNAIELAIWSNNIGELPDLSDALPALENIEANGANITLFPDANYPNLTNVDLSQNNFGFNIPKFVGMEG
LVSINMEDAGLSGYVAEDIWMNMPNLDSLLLNENHLISIPEDIFLSEQLSTHSFANQTATYPHTTIKQGENLEVFVPFIY
QALDFIAPSRHDLIIIKDNGRTLYEPPYPTYDGSYMYKIETAGLQPGEHLLEISLGYNSGEYTGWYDFPVTITE

Sequences:

>Translated_314_residues
MKKIIGLAFIAFCCILFAPTIKAQADTVPLPAPIIEAFPVEAIAEAIAGELDKDSVNDTITQADLDTMTLIPLPSLGLTG
EDLSVLNNEVFTNAIELAIWSNNIGELPDLSDALPALENIEANGANITLFPDANYPNLTNVDLSQNNFGFNIPKFVGMEG
LVSINMEDAGLSGYVAEDIWMNMPNLDSLLLNENHLISIPEDIFLSEQLSTHSFANQTATYPHTTIKQGENLEVFVPFIY
QALDFIAPSRHDLIIIKDNGRTLYEPPYPTYDGSYMYKIETAGLQPGEHLLEISLGYNSGEYTGWYDFPVTITE
>Mature_314_residues
MKKIIGLAFIAFCCILFAPTIKAQADTVPLPAPIIEAFPVEAIAEAIAGELDKDSVNDTITQADLDTMTLIPLPSLGLTG
EDLSVLNNEVFTNAIELAIWSNNIGELPDLSDALPALENIEANGANITLFPDANYPNLTNVDLSQNNFGFNIPKFVGMEG
LVSINMEDAGLSGYVAEDIWMNMPNLDSLLLNENHLISIPEDIFLSEQLSTHSFANQTATYPHTTIKQGENLEVFVPFIY
QALDFIAPSRHDLIIIKDNGRTLYEPPYPTYDGSYMYKIETAGLQPGEHLLEISLGYNSGEYTGWYDFPVTITE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34498; Mature: 34498

Theoretical pI: Translated: 3.74; Mature: 3.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIIGLAFIAFCCILFAPTIKAQADTVPLPAPIIEAFPVEAIAEAIAGELDKDSVNDTI
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCHH
TQADLDTMTLIPLPSLGLTGEDLSVLNNEVFTNAIELAIWSNNIGELPDLSDALPALENI
HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCCCCHHHHHHHHHCC
EANGANITLFPDANYPNLTNVDLSQNNFGFNIPKFVGMEGLVSINMEDAGLSGYVAEDIW
CCCCCEEEEEECCCCCCCCEEECCCCCCCCCCHHHHCCCCEEEEEECCCCCCCEEEHHHH
MNMPNLDSLLLNENHLISIPEDIFLSEQLSTHSFANQTATYPHTTIKQGENLEVFVPFIY
CCCCCHHHEEECCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEEHHHHH
QALDFIAPSRHDLIIIKDNGRTLYEPPYPTYDGSYMYKIETAGLQPGEHLLEISLGYNSG
HHHHHHCCCCCCEEEEECCCCEEECCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCC
EYTGWYDFPVTITE
CCCEEEECCEEEEC
>Mature Secondary Structure
MKKIIGLAFIAFCCILFAPTIKAQADTVPLPAPIIEAFPVEAIAEAIAGELDKDSVNDTI
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCHH
TQADLDTMTLIPLPSLGLTGEDLSVLNNEVFTNAIELAIWSNNIGELPDLSDALPALENI
HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCCCCHHHHHHHHHCC
EANGANITLFPDANYPNLTNVDLSQNNFGFNIPKFVGMEGLVSINMEDAGLSGYVAEDIW
CCCCCEEEEEECCCCCCCCEEECCCCCCCCCCHHHHCCCCEEEEEECCCCCCCEEEHHHH
MNMPNLDSLLLNENHLISIPEDIFLSEQLSTHSFANQTATYPHTTIKQGENLEVFVPFIY
CCCCCHHHEEECCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEEHHHHH
QALDFIAPSRHDLIIIKDNGRTLYEPPYPTYDGSYMYKIETAGLQPGEHLLEISLGYNSG
HHHHHHCCCCCCEEEEECCCCEEECCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCC
EYTGWYDFPVTITE
CCCEEEECCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA