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The map label for this gene is yxbF [H]

Identifier: 226224783

GI number: 226224783

Start: 2259759

End: 2260322

Strand: Direct

Name: yxbF [H]

Synonym: Lm4b_02201

Alternate gene names: 226224783

Gene position: 2259759-2260322 (Clockwise)

Preceding gene: 226224776

Following gene: 226224784

Centisome position: 77.58

GC content: 33.87

Gene sequence:

>564_bases
ATGGATAGAAGGATTAAAAAAACAAAACAAGCCTTAAACCAAGCTTTATTTACTCTTCTTGATGAAAAAACTTTTCAACA
GATTACGATTACGGATATTGTTACAGTAGCAGATGTTAATCGAGGCACGTTCTATAAACATTACCGTGACAAAGAAGAAC
TTTTAGATAGTATTATTGATGAAGTGCTGGCTGATTTACAAAAAGCGTATCAAGACCCTTATACACATAAGACGCCTTTT
TCCATTCAAACACTTACACCTTCCATGATAAAAATTTTTGATCATGTATACGGTCATCAAGCTTTTTATACACAAGTTAT
AAAATCGACAATCCGTCCCAGTTTTCAAAATCAAGTTTGTGACGTTATTCGGGAACTGATTTTAAATGACTTTGATTATT
CAGCTGACAGTTCGAGTATAGAGCCCATGTTATTTGCATCTTATCAAGCACATGCGATTTTCGGCATGATTGTTTTTTGG
GCAGAAGAAAGTTTTGCTCATTCACCGGCGTTTATGTCAGAGCAACTTCTTCATATTATTCAGACTAAAAATCCAATCTT
ATAA

Upstream 100 bases:

>100_bases
CGCTATCAATATGTAAAGAAAGCCTGTTTTGTTGATTAAGCAACACTTTTGCGTTATATGTATAGTAGTAGGAAATTTTC
TCGGATGGGAGTTTCAAATG

Downstream 100 bases:

>100_bases
TTCTTACATATTTGTTATATTATTTTCCTTCTTTGTAACTTGAAACGAGGGCTTCATAATCCTAGTCTTGCTATAATAAA
GACATCTTAGAAAGGTGTGT

Product: transcriptional regulator (tetR family)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MDRRIKKTKQALNQALFTLLDEKTFQQITITDIVTVADVNRGTFYKHYRDKEELLDSIIDEVLADLQKAYQDPYTHKTPF
SIQTLTPSMIKIFDHVYGHQAFYTQVIKSTIRPSFQNQVCDVIRELILNDFDYSADSSSIEPMLFASYQAHAIFGMIVFW
AEESFAHSPAFMSEQLLHIIQTKNPIL

Sequences:

>Translated_187_residues
MDRRIKKTKQALNQALFTLLDEKTFQQITITDIVTVADVNRGTFYKHYRDKEELLDSIIDEVLADLQKAYQDPYTHKTPF
SIQTLTPSMIKIFDHVYGHQAFYTQVIKSTIRPSFQNQVCDVIRELILNDFDYSADSSSIEPMLFASYQAHAIFGMIVFW
AEESFAHSPAFMSEQLLHIIQTKNPIL
>Mature_187_residues
MDRRIKKTKQALNQALFTLLDEKTFQQITITDIVTVADVNRGTFYKHYRDKEELLDSIIDEVLADLQKAYQDPYTHKTPF
SIQTLTPSMIKIFDHVYGHQAFYTQVIKSTIRPSFQNQVCDVIRELILNDFDYSADSSSIEPMLFASYQAHAIFGMIVFW
AEESFAHSPAFMSEQLLHIIQTKNPIL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH tetR-type DNA-binding domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21689; Mature: 21689

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRRIKKTKQALNQALFTLLDEKTFQQITITDIVTVADVNRGTFYKHYRDKEELLDSIID
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHH
EVLADLQKAYQDPYTHKTPFSIQTLTPSMIKIFDHVYGHQAFYTQVIKSTIRPSFQNQVC
HHHHHHHHHHCCCCCCCCCCEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
DVIRELILNDFDYSADSSSIEPMLFASYQAHAIFGMIVFWAEESFAHSPAFMSEQLLHII
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
QTKNPIL
HHCCCCC
>Mature Secondary Structure
MDRRIKKTKQALNQALFTLLDEKTFQQITITDIVTVADVNRGTFYKHYRDKEELLDSIID
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHH
EVLADLQKAYQDPYTHKTPFSIQTLTPSMIKIFDHVYGHQAFYTQVIKSTIRPSFQNQVC
HHHHHHHHHHCCCCCCCCCCEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
DVIRELILNDFDYSADSSSIEPMLFASYQAHAIFGMIVFWAEESFAHSPAFMSEQLLHII
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
QTKNPIL
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377 [H]