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The map label for this gene is ydiF [H]

Identifier: 226224679

GI number: 226224679

Start: 2151370

End: 2153322

Strand: Direct

Name: ydiF [H]

Synonym: Lm4b_02094

Alternate gene names: 226224679

Gene position: 2151370-2153322 (Clockwise)

Preceding gene: 226224677

Following gene: 226224680

Centisome position: 73.86

GC content: 38.97

Gene sequence:

>1953_bases
ATGATATTATTACAAGTTCAGCAAATTTCTAAATTCTTCGGTGCAGAAGTTATTTTAGATAATATTAAATTAGAAGTTAA
AACAGGTGACCGAATCGCTCTAGTTGGGCGAAATGGTGCAGGAAAATCCACTTTACTTAAAATTATCGCCGGCAAAATGA
GTTATGATGGCGGAACTATTTCCAAACCAAAAAGTGTGGAAATTGGCTATTTGGCTCAAAATACCGGGCTAGAATCTTCT
AAAACCATTTGGGATGAAATGCTTAGTGTATTCGATTCACTGCGCAAAATGGAAGCTGATTTGCGCAAAATGGAGCTTCG
TCTCGGTGAACCGGAACTCTATAATGATCCAGAAAAATACCAAGCACTGATGACGGATTATGATACGTTACAACATACTT
TTAAAGAAAGTGGCGGCTATACTTACGAAGCAGAAATCCGTTCTGTTTTAAATGGATTGCGTTTTTATCCAGAAGATTAT
GAAGTAGAAATCGCTTCTCTAAGTGGTGGCCAAAAAACGCGGCTTGCTTTAGCCAAATTACTGCTTGCTAAACAAGATAT
TCTTGTTCTTGATGAGCCCACCAACCATTTAGATATCGAAACACTAGCGTGGCTCGAGACCTATTTACAAAATTATCATG
GTTCGTTACTCATCGTATCCCATGACCGCTACTTCCTTGATAAAGTCGTGAATCAAGTATACGAAATCAGCCGAACCAAA
ATTGATCACTACAAAGGAAATTACAGTTCATTCGTTAATCAAAAACAAGCGAAACTAGAACAAATGTGGAAAGAGTTCGA
TAAACAACAAAAACAGATTGCCAAACTAGAAGATTTTGTTGCTAGAAATATTGTCCGCGCATCGACAACAAAACGAGCTC
AGAGTAGAAGAAAACAATTAGAAAAAATGGATGTGCTTGGTCGCCCGCAAGGTGATGAAAAAGCAGCGCATTTTGGTTTC
CAATTTGAAAAACAAACAGGTAAAGATGTTTTAATGGTAGATCAGCTGAGCATTGGTTACGCAAAAGATAAGCGCATTGC
TTCCAACCTAACGTTCGAAATGAAACGCCAAGATAGTCTCGCGCTCGTTGGTCCAAACGGAATCGGCAAATCAACTCTAC
TTAAAACGCTTATTCGTGATATCCCAGCTTTAAGTGGCGAATTCCACTTCGGTGCTGGCGTGAAAATTGGCTACTACGAT
CAAGAACAAGCCAAACTGACATCCAACAAAACTGTTTTAATGGAGCTATGGGATGATTATCCAGAGTTGAATGAAGTAAA
CGTTCGTACAACACTTGGTAATTTCCTTTTTTCAGATGATGATGTATTAAAAAATGTCCAGTCTTTAAGTGGTGGCGAAA
AAGCGCGACTTGCCCTTGCTAAGCTCACTTTACTTGAAGCCAATGTCCTTATTCTCGATGAACCGACCAACCATTTAGAT
ATTGAAAGTAAAGAAGTTTTAGAAGCAGCTTTAATTGATTTTGAAGGCACGATTCTCTTCGTTTCCCATGACCGCTATTT
TATTAACCGAATTGCTTCTAAAATCGTCGAACTAGCGCCCGAAAAAGCGACCGTTTTCCTAGGAGATTACGATTATTATC
AAGAAAAATTAGCAGAAGAAAAAGAACTGGCACGACTTGATGCCGAGGATCGACGCAAAAAAGGCGAACAAGTGGAAGCG
ACCTCCTCTGTTCGAAAATTAAACTATCAAGAAGAAAAAGAACAACAAAAACTTCTTCGCCAAAGAAAACGCAAACTAGA
AGAAGTAGAAAAATCCATGGAAGCAACGGACAAAAAGATTGCCGAGCTTGAACTTCAATTAACGAACCCAGAAGTTTTCC
AAGACCATGAAAAAGCCCTTGAAATCACTCAAGAGCTAGACGCCGTAAAAGCTGACGGAGAGAAATTAATGGAAGAATGG
GAACAAATAAGCGAAGAACTGGAATCCATGTAA

Upstream 100 bases:

>100_bases
GTTTTCACAATCTTTTTTATTCAAGCTGTCTTGGCTATCTCATTGCGATTACTTAGCTTTTAAGATAAACTAGTAGGGAG
AACGTTCGAGGAGAGAGATT

Downstream 100 bases:

>100_bases
TCTGCATAAAAAAAGGAGCAAACAATGAAAAAGATTTTAATTATTTCTAGTTCGATTATCGTTGGTTTACTTGTCATTAT
TACTATTTGCGCAAGTTTTT

Product: ABC transporter (ATP-binding protein)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 650; Mature: 650

Protein sequence:

>650_residues
MILLQVQQISKFFGAEVILDNIKLEVKTGDRIALVGRNGAGKSTLLKIIAGKMSYDGGTISKPKSVEIGYLAQNTGLESS
KTIWDEMLSVFDSLRKMEADLRKMELRLGEPELYNDPEKYQALMTDYDTLQHTFKESGGYTYEAEIRSVLNGLRFYPEDY
EVEIASLSGGQKTRLALAKLLLAKQDILVLDEPTNHLDIETLAWLETYLQNYHGSLLIVSHDRYFLDKVVNQVYEISRTK
IDHYKGNYSSFVNQKQAKLEQMWKEFDKQQKQIAKLEDFVARNIVRASTTKRAQSRRKQLEKMDVLGRPQGDEKAAHFGF
QFEKQTGKDVLMVDQLSIGYAKDKRIASNLTFEMKRQDSLALVGPNGIGKSTLLKTLIRDIPALSGEFHFGAGVKIGYYD
QEQAKLTSNKTVLMELWDDYPELNEVNVRTTLGNFLFSDDDVLKNVQSLSGGEKARLALAKLTLLEANVLILDEPTNHLD
IESKEVLEAALIDFEGTILFVSHDRYFINRIASKIVELAPEKATVFLGDYDYYQEKLAEEKELARLDAEDRRKKGEQVEA
TSSVRKLNYQEEKEQQKLLRQRKRKLEEVEKSMEATDKKIAELELQLTNPEVFQDHEKALEITQELDAVKADGEKLMEEW
EQISEELESM

Sequences:

>Translated_650_residues
MILLQVQQISKFFGAEVILDNIKLEVKTGDRIALVGRNGAGKSTLLKIIAGKMSYDGGTISKPKSVEIGYLAQNTGLESS
KTIWDEMLSVFDSLRKMEADLRKMELRLGEPELYNDPEKYQALMTDYDTLQHTFKESGGYTYEAEIRSVLNGLRFYPEDY
EVEIASLSGGQKTRLALAKLLLAKQDILVLDEPTNHLDIETLAWLETYLQNYHGSLLIVSHDRYFLDKVVNQVYEISRTK
IDHYKGNYSSFVNQKQAKLEQMWKEFDKQQKQIAKLEDFVARNIVRASTTKRAQSRRKQLEKMDVLGRPQGDEKAAHFGF
QFEKQTGKDVLMVDQLSIGYAKDKRIASNLTFEMKRQDSLALVGPNGIGKSTLLKTLIRDIPALSGEFHFGAGVKIGYYD
QEQAKLTSNKTVLMELWDDYPELNEVNVRTTLGNFLFSDDDVLKNVQSLSGGEKARLALAKLTLLEANVLILDEPTNHLD
IESKEVLEAALIDFEGTILFVSHDRYFINRIASKIVELAPEKATVFLGDYDYYQEKLAEEKELARLDAEDRRKKGEQVEA
TSSVRKLNYQEEKEQQKLLRQRKRKLEEVEKSMEATDKKIAELELQLTNPEVFQDHEKALEITQELDAVKADGEKLMEEW
EQISEELESM
>Mature_650_residues
MILLQVQQISKFFGAEVILDNIKLEVKTGDRIALVGRNGAGKSTLLKIIAGKMSYDGGTISKPKSVEIGYLAQNTGLESS
KTIWDEMLSVFDSLRKMEADLRKMELRLGEPELYNDPEKYQALMTDYDTLQHTFKESGGYTYEAEIRSVLNGLRFYPEDY
EVEIASLSGGQKTRLALAKLLLAKQDILVLDEPTNHLDIETLAWLETYLQNYHGSLLIVSHDRYFLDKVVNQVYEISRTK
IDHYKGNYSSFVNQKQAKLEQMWKEFDKQQKQIAKLEDFVARNIVRASTTKRAQSRRKQLEKMDVLGRPQGDEKAAHFGF
QFEKQTGKDVLMVDQLSIGYAKDKRIASNLTFEMKRQDSLALVGPNGIGKSTLLKTLIRDIPALSGEFHFGAGVKIGYYD
QEQAKLTSNKTVLMELWDDYPELNEVNVRTTLGNFLFSDDDVLKNVQSLSGGEKARLALAKLTLLEANVLILDEPTNHLD
IESKEVLEAALIDFEGTILFVSHDRYFINRIASKIVELAPEKATVFLGDYDYYQEKLAEEKELARLDAEDRRKKGEQVEA
TSSVRKLNYQEEKEQQKLLRQRKRKLEEVEKSMEATDKKIAELELQLTNPEVFQDHEKALEITQELDAVKADGEKLMEEW
EQISEELESM

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=542, Percent_Identity=32.1033210332103, Blast_Score=265, Evalue=9e-71,
Organism=Homo sapiens, GI27881506, Length=542, Percent_Identity=33.5793357933579, Blast_Score=244, Evalue=1e-64,
Organism=Homo sapiens, GI10947137, Length=542, Percent_Identity=33.5793357933579, Blast_Score=244, Evalue=1e-64,
Organism=Homo sapiens, GI10947135, Length=543, Percent_Identity=32.2283609576427, Blast_Score=223, Evalue=5e-58,
Organism=Homo sapiens, GI69354671, Length=543, Percent_Identity=32.2283609576427, Blast_Score=223, Evalue=5e-58,
Organism=Escherichia coli, GI1789751, Length=655, Percent_Identity=32.3664122137405, Blast_Score=342, Evalue=3e-95,
Organism=Escherichia coli, GI1787041, Length=537, Percent_Identity=33.7057728119181, Blast_Score=303, Evalue=3e-83,
Organism=Escherichia coli, GI2367384, Length=525, Percent_Identity=34.8571428571429, Blast_Score=283, Evalue=2e-77,
Organism=Escherichia coli, GI1787182, Length=652, Percent_Identity=31.2883435582822, Blast_Score=261, Evalue=1e-70,
Organism=Escherichia coli, GI1788165, Length=239, Percent_Identity=26.7782426778243, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1786698, Length=203, Percent_Identity=29.5566502463054, Blast_Score=70, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17553372, Length=547, Percent_Identity=32.1755027422303, Blast_Score=249, Evalue=3e-66,
Organism=Caenorhabditis elegans, GI17555318, Length=532, Percent_Identity=31.9548872180451, Blast_Score=239, Evalue=3e-63,
Organism=Caenorhabditis elegans, GI17559834, Length=544, Percent_Identity=29.9632352941176, Blast_Score=236, Evalue=4e-62,
Organism=Saccharomyces cerevisiae, GI6320874, Length=547, Percent_Identity=32.1755027422303, Blast_Score=241, Evalue=2e-64,
Organism=Saccharomyces cerevisiae, GI6321121, Length=537, Percent_Identity=32.2160148975791, Blast_Score=240, Evalue=5e-64,
Organism=Saccharomyces cerevisiae, GI6324314, Length=394, Percent_Identity=29.1878172588832, Blast_Score=136, Evalue=1e-32,
Organism=Saccharomyces cerevisiae, GI6323278, Length=394, Percent_Identity=26.3959390862944, Blast_Score=125, Evalue=3e-29,
Organism=Saccharomyces cerevisiae, GI6325030, Length=392, Percent_Identity=29.3367346938776, Blast_Score=123, Evalue=7e-29,
Organism=Saccharomyces cerevisiae, GI6323217, Length=252, Percent_Identity=30.1587301587302, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24666836, Length=549, Percent_Identity=32.2404371584699, Blast_Score=266, Evalue=3e-71,
Organism=Drosophila melanogaster, GI24641342, Length=533, Percent_Identity=32.6454033771107, Blast_Score=255, Evalue=8e-68,
Organism=Drosophila melanogaster, GI24642252, Length=542, Percent_Identity=31.549815498155, Blast_Score=248, Evalue=7e-66,
Organism=Drosophila melanogaster, GI18859989, Length=542, Percent_Identity=31.549815498155, Blast_Score=248, Evalue=7e-66,
Organism=Drosophila melanogaster, GI281363262, Length=220, Percent_Identity=27.7272727272727, Blast_Score=69, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24653245, Length=220, Percent_Identity=27.7272727272727, Blast_Score=69, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 74324; Mature: 74324

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS00867 CPSASE_2 ; PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILLQVQQISKFFGAEVILDNIKLEVKTGDRIALVGRNGAGKSTLLKIIAGKMSYDGGTI
CEEEEHHHHHHHHCHHEEEECEEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCC
SKPKSVEIGYLAQNTGLESSKTIWDEMLSVFDSLRKMEADLRKMELRLGEPELYNDPEKY
CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
QALMTDYDTLQHTFKESGGYTYEAEIRSVLNGLRFYPEDYEVEIASLSGGQKTRLALAKL
HHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHH
LLAKQDILVLDEPTNHLDIETLAWLETYLQNYHGSLLIVSHDRYFLDKVVNQVYEISRTK
HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHH
IDHYKGNYSSFVNQKQAKLEQMWKEFDKQQKQIAKLEDFVARNIVRASTTKRAQSRRKQL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKMDVLGRPQGDEKAAHFGFQFEKQTGKDVLMVDQLSIGYAKDKRIASNLTFEMKRQDSL
HHHHHCCCCCCCCHHHHCCEEEECCCCCCEEEEECCCCCCCCCHHHHHCCEEEEECCCCE
ALVGPNGIGKSTLLKTLIRDIPALSGEFHFGAGVKIGYYDQEQAKLTSNKTVLMELWDDY
EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCHHHHHCCCCEEEEEHHCCC
PELNEVNVRTTLGNFLFSDDDVLKNVQSLSGGEKARLALAKLTLLEANVLILDEPTNHLD
CCCCCEEEHEEHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHEECCEEEEECCCCCCC
IESKEVLEAALIDFEGTILFVSHDRYFINRIASKIVELAPEKATVFLGDYDYYQEKLAEE
CCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
KELARLDAEDRRKKGEQVEATSSVRKLNYQEEKEQQKLLRQRKRKLEEVEKSMEATDKKI
HHHHHCCCHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AELELQLTNPEVFQDHEKALEITQELDAVKADGEKLMEEWEQISEELESM
HHEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MILLQVQQISKFFGAEVILDNIKLEVKTGDRIALVGRNGAGKSTLLKIIAGKMSYDGGTI
CEEEEHHHHHHHHCHHEEEECEEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCC
SKPKSVEIGYLAQNTGLESSKTIWDEMLSVFDSLRKMEADLRKMELRLGEPELYNDPEKY
CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
QALMTDYDTLQHTFKESGGYTYEAEIRSVLNGLRFYPEDYEVEIASLSGGQKTRLALAKL
HHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHH
LLAKQDILVLDEPTNHLDIETLAWLETYLQNYHGSLLIVSHDRYFLDKVVNQVYEISRTK
HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHH
IDHYKGNYSSFVNQKQAKLEQMWKEFDKQQKQIAKLEDFVARNIVRASTTKRAQSRRKQL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKMDVLGRPQGDEKAAHFGFQFEKQTGKDVLMVDQLSIGYAKDKRIASNLTFEMKRQDSL
HHHHHCCCCCCCCHHHHCCEEEECCCCCCEEEEECCCCCCCCCHHHHHCCEEEEECCCCE
ALVGPNGIGKSTLLKTLIRDIPALSGEFHFGAGVKIGYYDQEQAKLTSNKTVLMELWDDY
EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCHHHHHCCCCEEEEEHHCCC
PELNEVNVRTTLGNFLFSDDDVLKNVQSLSGGEKARLALAKLTLLEANVLILDEPTNHLD
CCCCCEEEHEEHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHEECCEEEEECCCCCCC
IESKEVLEAALIDFEGTILFVSHDRYFINRIASKIVELAPEKATVFLGDYDYYQEKLAEE
CCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
KELARLDAEDRRKKGEQVEATSSVRKLNYQEEKEQQKLLRQRKRKLEEVEKSMEATDKKI
HHHHHCCCHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AELELQLTNPEVFQDHEKALEITQELDAVKADGEKLMEEWEQISEELESM
HHEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]