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The map label for this gene is yqfA [C]

Identifier: 226224467

GI number: 226224467

Start: 1924039

End: 1924671

Strand: Direct

Name: yqfA [C]

Synonym: Lm4b_01880

Alternate gene names: 226224467

Gene position: 1924039-1924671 (Clockwise)

Preceding gene: 226224449

Following gene: 226224468

Centisome position: 66.06

GC content: 38.7

Gene sequence:

>633_bases
ATGAATGTCACTTCTTACAATTGGAAAGAAGAAGTAGCCAATGCTATAACGCATGGTATTGGGTTTATCCTTAGTATTCC
CGCGCTCGTCTTACTTATAATATTCGCCGCCGGAAAAGATAATCCTCTTTATTTAACAAGTTTTTTAATTTATGGAATTT
CCCTCATGTTGCTTTATATTTGTTCCACCCTGCTTCATAGTTTTAAACCTTGCAAGGCGCGGACGGTTTTTAACATTATG
GACCACGCAGCGATTTATGTATTAATTGCTGGCAGTTATACGCCATTTGTTTTGATTACGATTCAAGGGACACTCGGCTG
GACACTATTTGGTGTCATTTGGGGCCTCGCAATTGCTGGGATTATTTATAAGATATTCATGACTGGCAAATTAAAACTTT
TGTCGACAAGTGTTTACTTACTTATGGGTTGGATGGTTATGTTTGCCATTAAACCGCTTTATGCCGGGCTGACTCCAACT
GGGTTTTGGTTACTTGCAACTGGTGGGATTATGTTTACAGTAGGTGCTGTTTTTTACAGTATCCCTCGTGTCCCGTATAT
GCACGCGATTTGGCATTTATTTGTTATCGCGGGAACCGCTTTTATGTATTTCTGTATTTTATTTTATGTTTAA

Upstream 100 bases:

>100_bases
GAAAAGAGAAAGAAATGGTATTTGTCTTTCTATTCTGTATTTTTTAGCGTATGATAGATATATAAAACACACAAAATTTG
TAGAAAAGTATGGTGATAAA

Downstream 100 bases:

>100_bases
ATAACGCAATGCAAAGACCTTCTCCAATGCGAGAAGGTCTTTTTATATAGTATGTCACAATTGAGACTTGTTTTTAATTA
TGTCATACTATATAATGATT

Product: hemolysin III

Products: NA

Alternate protein names: Hemolysin III; Hly-III [H]

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MNVTSYNWKEEVANAITHGIGFILSIPALVLLIIFAAGKDNPLYLTSFLIYGISLMLLYICSTLLHSFKPCKARTVFNIM
DHAAIYVLIAGSYTPFVLITIQGTLGWTLFGVIWGLAIAGIIYKIFMTGKLKLLSTSVYLLMGWMVMFAIKPLYAGLTPT
GFWLLATGGIMFTVGAVFYSIPRVPYMHAIWHLFVIAGTAFMYFCILFYV

Sequences:

>Translated_210_residues
MNVTSYNWKEEVANAITHGIGFILSIPALVLLIIFAAGKDNPLYLTSFLIYGISLMLLYICSTLLHSFKPCKARTVFNIM
DHAAIYVLIAGSYTPFVLITIQGTLGWTLFGVIWGLAIAGIIYKIFMTGKLKLLSTSVYLLMGWMVMFAIKPLYAGLTPT
GFWLLATGGIMFTVGAVFYSIPRVPYMHAIWHLFVIAGTAFMYFCILFYV
>Mature_210_residues
MNVTSYNWKEEVANAITHGIGFILSIPALVLLIIFAAGKDNPLYLTSFLIYGISLMLLYICSTLLHSFKPCKARTVFNIM
DHAAIYVLIAGSYTPFVLITIQGTLGWTLFGVIWGLAIAGIIYKIFMTGKLKLLSTSVYLLMGWMVMFAIKPLYAGLTPT
GFWLLATGGIMFTVGAVFYSIPRVPYMHAIWHLFVIAGTAFMYFCILFYV

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=207, Percent_Identity=32.8502415458937, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI52630445, Length=207, Percent_Identity=33.3333333333333, Blast_Score=88, Evalue=5e-18,
Organism=Homo sapiens, GI154759277, Length=231, Percent_Identity=29.4372294372294, Blast_Score=77, Evalue=2e-14,
Organism=Escherichia coli, GI1789266, Length=208, Percent_Identity=39.4230769230769, Blast_Score=156, Evalue=9e-40,
Organism=Caenorhabditis elegans, GI71996356, Length=206, Percent_Identity=34.9514563106796, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24640324, Length=222, Percent_Identity=32.4324324324324, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 23401; Mature: 23401

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTSYNWKEEVANAITHGIGFILSIPALVLLIIFAAGKDNPLYLTSFLIYGISLMLLYI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
CSTLLHSFKPCKARTVFNIMDHAAIYVLIAGSYTPFVLITIQGTLGWTLFGVIWGLAIAG
HHHHHHCCCCCCHHHHHHHHHHHHEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHH
IIYKIFMTGKLKLLSTSVYLLMGWMVMFAIKPLYAGLTPTGFWLLATGGIMFTVGAVFYS
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHH
IPRVPYMHAIWHLFVIAGTAFMYFCILFYV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MNVTSYNWKEEVANAITHGIGFILSIPALVLLIIFAAGKDNPLYLTSFLIYGISLMLLYI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
CSTLLHSFKPCKARTVFNIMDHAAIYVLIAGSYTPFVLITIQGTLGWTLFGVIWGLAIAG
HHHHHHCCCCCCHHHHHHHHHHHHEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHH
IIYKIFMTGKLKLLSTSVYLLMGWMVMFAIKPLYAGLTPTGFWLLATGGIMFTVGAVFYS
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHH
IPRVPYMHAIWHLFVIAGTAFMYFCILFYV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7495855 [H]